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L2_019_000M1_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_000M1_scaffold_9_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(550..1119)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DN74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81648.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_9_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1288..1614
DNA (327bp) protein (109aa)
Helix-turn-helix n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS49_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CCX81649.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Helix-turn-helix.
L2_019_000M1_scaffold_9_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2016..2786)
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6M8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15273.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_9_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3048..4526)
DNA (1479bp) protein (493aa)
Fibronectin type III domain./L,D-transpeptidase catalytic domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6M7_9FIRM
Fibronectin type III domain./L,D-transpeptidase catalytic domain.
Fibronectin type III domain./L,D-transpeptidase catalytic domain {ECO:0000313|EMBL:CBL15272.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_9_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4631..4963)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0L1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81776.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_9_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5216..6124
DNA (909bp) protein (303aa)
Lyzozyme M1 (1 4-beta-N-acetylmuramidase) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNI8_9FIRM
Lyzozyme M1 (1 4-beta-N-acetylmuramidase) {ECO:0000313|EMBL:CCX81778.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L2_019_000M1_scaffold_9_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6140..6595
DNA (456bp) protein (152aa)
LuxS protein involved in autoinducer AI2 synthesis (EC:4.4.1.21)
S-ribosylhomocysteine lyase {ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|SAAS:SAAS00059628, ECO:0000313|EMBL:CBL15270.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
LuxS protein involved in autoinducer AI2 synthesis n=2 Tax=root RepID=D4L6M5_9FIRM
L2_019_000M1_scaffold_9_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6766..8313
DNA (1548bp) protein (516aa)
Peptidase M23 family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0L4_9FIRM
Peptidase M23 family {ECO:0000313|EMBL:CCX81781.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
peptidase M23
L2_019_000M1_scaffold_9_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8385..8567)
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DYW3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15266.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_9_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8726..9244
DNA (519bp) protein (173aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNJ3_9FIRM
L2_019_000M1_scaffold_9_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9431..10639
DNA (1209bp) protein (403aa)
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Phosphoglycerate kinase n=2 Tax=Ruminococcus RepID=D4L6M0_9FIRM
L2_019_000M1_scaffold_9_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10733..11500
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=2 Tax=root RepID=R5DNG0_9FIRM
L2_019_000M1_scaffold_9_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11627..13138
DNA (1512bp) protein (504aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0M8_9FIRM
L2_019_000M1_scaffold_9_14
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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13296..13796
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K4L4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43502.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L2_019_000M1_scaffold_9_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14358..16097
DNA (1740bp) protein (580aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYX6_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX81797.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_9_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16094..17842
DNA (1749bp) protein (583aa)
ABC-type multidrug transport system, ATPase and permease components (EC:3.6.3.-)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNK8_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CCX81798.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_9_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18013..19194)
DNA (1182bp) protein (394aa)
Cation diffusion facilitator family transporter n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSI5_9FIRM
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CCX81799.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
cation diffusion facilitator family transporter
L2_019_000M1_scaffold_9_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19209..20114)
DNA (906bp) protein (302aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNG4_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CCX81800.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_019_000M1_scaffold_9_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20237..22372)
DNA (2136bp) protein (712aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Putative translation elongation factor G n=2 Tax=root RepID=R5DYY2_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:CCX81802.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_9_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22628..24304)
DNA (1677bp) protein (559aa)
dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Dihydroxy-acid dehydratase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6L5_9FIRM
L2_019_000M1_scaffold_9_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24459..25055)
DNA (597bp) protein (199aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DSI9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX81804.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_9_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25112..26539)
DNA (1428bp) protein (476aa)
Amino acid carrier protein n=2 Tax=Ruminococcus RepID=D4L6L3_9FIRM
amino acid carrier protein
Amino acid carrier protein {ECO:0000313|EMBL:CCX81805.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_019_000M1_scaffold_9_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26622..27272)
DNA (651bp) protein (217aa)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0N7_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CCX81806.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L2_019_000M1_scaffold_9_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27269..28192)
DNA (924bp) protein (308aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=2 Tax=root RepID=R5DYY7_9FIRM
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CCX81807.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L2_019_000M1_scaffold_9_25

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comp(28259..29161)
DNA (903bp) protein (301aa)
Thioredoxin-disulfide reductase (Fragment) n=1 Tax=human gut metagenome RepID=K1SXT7_9ZZZZ
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:EKC65447.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
thioredoxin reductase
L2_019_000M1_scaffold_9_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29145..29474)
DNA (330bp) protein (110aa)
Thioredoxin n=2 Tax=root RepID=R5DSJ8_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
thioredoxin
L2_019_000M1_scaffold_9_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29702..30535)
DNA (834bp) protein (278aa)
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152, ECO:0000313|EMBL:CBL15255.1};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Probable endonuclease 4 n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6L0_9FIRM
L2_019_000M1_scaffold_9_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30855..31961)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6K9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15254.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_019_000M1_scaffold_9_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32164..34797)
DNA (2634bp) protein (878aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=2 Tax=root RepID=R5DSK3_9FIRM
L2_019_000M1_scaffold_9_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35189..36418)
DNA (1230bp) protein (410aa)
Collagenase and related proteases (EC:3.4.-.-)
Collagenase and related proteases {ECO:0000313|EMBL:CBL15252.1}; EC=3.4.-.- {ECO:0000313|EMBL:CBL15252.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Collagenase and related proteases n=3 Tax=root RepID=D4L6K7_9FIRM
Displaying items 1-30 of 170 in total

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