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L2_019_061G1_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 556 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_061G1_scaffold_0_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..121)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6SW65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJZ96428.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
L2_019_061G1_scaffold_0_2
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(150..434)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JZA5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96425.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
L2_019_061G1_scaffold_0_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(447..1154)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z0W5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83886.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_019_061G1_scaffold_0_4
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1190..1399)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B3 RepID=R0B4W4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJZ96427.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
cro/C1-type HTH DNA-binding domain protein
L2_019_061G1_scaffold_0_5
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1570..2103
DNA (534bp) protein (178aa)
Periplasmic Fe hydrogenase {ECO:0000313|EMBL:KJZ87922.1}; EC=1.12.7.2 {ECO:0000313|EMBL:KJZ87922.1};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Transcriptional regulator, Cro/CI family n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UQB7_CLOBO
Cro/CI family transcriptional regulator
L2_019_061G1_scaffold_0_6
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2121..2627
DNA (507bp) protein (169aa)
Conserved phage protein n=2 Tax=Clostridium botulinum B RepID=B2TP22_CLOBB
Phage protein {ECO:0000313|EMBL:KJZ96442.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
phage protein
L2_019_061G1_scaffold_0_7
unknown

Not on your lists

2660..2833
DNA (174bp) protein (58aa)

This feature has no annotations

L2_019_061G1_scaffold_0_8
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2845..4230
DNA (1386bp) protein (462aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=B9E2U1_CLOK1
UPF0325 protein YaeH {ECO:0000313|EMBL:KJZ96440.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
L2_019_061G1_scaffold_0_9
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4516..5610
DNA (1095bp) protein (365aa)
Site-specific recombinase XerD n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRQ4_CLOSA
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:KJZ96441.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
xerD2; site-specific recombinase XerD
L2_019_061G1_scaffold_0_10
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5651..6565)
DNA (915bp) protein (305aa)
Deblocking aminopeptidase {ECO:0000313|EMBL:KJZ83865.1}; EC=3.4.11.- {ECO:0000313|EMBL:KJZ83865.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Peptidase M42 family protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JJF0_CLOBU
aminopeptidase, M42 family
L2_019_061G1_scaffold_0_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6756..8288)
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z980_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36426.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
putative cell wall binding protein
L2_019_061G1_scaffold_0_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8423..9484)
DNA (1062bp) protein (354aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hisC3; histidinol-phosphate aminotransferase HisC (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JAD9_CLOBU
L2_019_061G1_scaffold_0_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9588..11255)
DNA (1668bp) protein (556aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
leuA1; 2-isopropylmalate synthase LeuA (EC:2.3.3.13)
2-isopropylmalate synthase n=2 Tax=Clostridium butyricum RepID=B1R1D5_CLOBU
L2_019_061G1_scaffold_0_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11627..12238
DNA (612bp) protein (204aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1R1D6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD16147.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_019_061G1_scaffold_0_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12399..13319
DNA (921bp) protein (307aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0AWJ5_CLOBU
Membrane protein {ECO:0000313|EMBL:KHD16148.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
putative permease
L2_019_061G1_scaffold_0_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13364..14290)
DNA (927bp) protein (309aa)
ykfA1; murein peptide carboxypeptidase YkfA (EC:3.4.16.-)
Muramoyltetrapeptide carboxypeptidase n=3 Tax=Clostridium butyricum RepID=B1R1D8_CLOBU
Peptidase S66 {ECO:0000313|EMBL:KHD16149.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L2_019_061G1_scaffold_0_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14427..14924)
DNA (498bp) protein (166aa)
Transcriptional regulator, CarD family n=2 Tax=Clostridium butyricum RepID=M8JAE6_CLOBU
CarD family transcriptional regulator {ECO:0000313|EMBL:KHD16150.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
ydeB1; putative transcription factor YdeB
L2_019_061G1_scaffold_0_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15145..15789
DNA (645bp) protein (215aa)
UPI0003D5FC42 related cluster n=1 Tax=unknown RepID=UPI0003D5FC42
LysM protein {ECO:0000313|EMBL:ETI89359.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
LysM domain-containing protein
L2_019_061G1_scaffold_0_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15854..17251)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1R1E1_CLOBU
Peptidoglycan-binding protein {ECO:0000313|EMBL:KHD16316.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
ErfK family protein
L2_019_061G1_scaffold_0_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17817..18296
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G722_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KHD16152.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_019_061G1_scaffold_0_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18527..19069)
DNA (543bp) protein (181aa)
Collagenolytic protease n=3 Tax=Clostridium butyricum RepID=B1R1E2_CLOBU
Collagenolytic protease {ECO:0000313|EMBL:KHD16153.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
cell wall binding repeat-containing protein
L2_019_061G1_scaffold_0_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19395..20765
DNA (1371bp) protein (457aa)
UPI0003D6438A related cluster n=1 Tax=unknown RepID=UPI0003D6438A
Hydrogenase subunit {ECO:0000313|EMBL:ETI89362.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
[Fe] hydrogenase
L2_019_061G1_scaffold_0_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20835..24062)
DNA (3228bp) protein (1076aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
UPI0003D5B34B related cluster n=1 Tax=unknown RepID=UPI0003D5B34B
sensor histidine kinase/response regulator
L2_019_061G1_scaffold_0_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24382..26418)
DNA (2037bp) protein (679aa)
UPI0003D68366 related cluster n=1 Tax=unknown RepID=UPI0003D68366
Penicillin-binding protein 3 {ECO:0000313|EMBL:ETI89364.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
peptidoglycan glycosyltransferase
L2_019_061G1_scaffold_0_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26579..26860)
DNA (282bp) protein (94aa)
UPI0003D639C0 related cluster n=1 Tax=unknown RepID=UPI0003D639C0
Competence protein {ECO:0000313|EMBL:ETI89365.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
L2_019_061G1_scaffold_0_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26998..28314)
DNA (1317bp) protein (439aa)
cca; CCA-adding enzyme (EC:2.7.7.72)
UPI0003D64AD2 related cluster n=1 Tax=unknown RepID=UPI0003D64AD2
Polynucleotide adenylyltransferase {ECO:0000313|EMBL:KHD16157.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L2_019_061G1_scaffold_0_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28404..29300)
DNA (897bp) protein (299aa)
Transcriptional regulator, RpiR family n=4 Tax=Clostridium butyricum RepID=B1R1E8_CLOBU
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:KJZ83889.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
transcriptional regulator
L2_019_061G1_scaffold_0_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29469..30185)
DNA (717bp) protein (239aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rluB2; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.22)
Pseudouridine synthase n=3 Tax=Clostridium butyricum RepID=B1R1E9_CLOBU
L2_019_061G1_scaffold_0_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30361..31809)
DNA (1449bp) protein (483aa)
TrkH family potassium uptake protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AUH5_CLOBU
Potassium transporter KefA {ECO:0000313|EMBL:KHD16160.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
trkH; Trk system potassium uptake protein TrkH
L2_019_061G1_scaffold_0_30
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31799..33178)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AJ51_CLOBU
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:KJZ83881.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
trkA; potassium transporter peripheral membrane component
Displaying items 1-30 of 556 in total

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