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L2_019_061G1_scaffold_135

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_061G1_scaffold_135_1
Actinomyces turicensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..3987)
DNA (3987bp) protein (1329aa)
Uncharacterized protein (Fragment) n=1 Tax=Actinomyces turicensis ACS-279-V-Col4 RepID=K0YVC0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EJZ87857.1}; Flags: Fragment;; TaxID=883077 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces turicensis ACS-279-V-Col4.;"
surB; cell surface protein
L2_019_061G1_scaffold_135_2
Actinomyces turicensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4113..4883)
DNA (771bp) protein (257aa)
Uncharacterized protein (Fragment) n=1 Tax=Actinomyces turicensis ACS-279-V-Col4 RepID=K0YVC0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EJZ87857.1}; Flags: Fragment;; TaxID=883077 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces turicensis ACS-279-V-Col4.;"
surA; cell surface protein
L2_019_061G1_scaffold_135_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5357..6118)
DNA (762bp) protein (254aa)
sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit (EC:1.3.99.1)
succinate dehydrogenase n=1 Tax=Varibaculum cambriense RepID=UPI0003B6FF51
Uncharacterized protein {ECO:0000313|EMBL:ETI81764.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_019_061G1_scaffold_135_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6115..8100)
DNA (1986bp) protein (662aa)
sdhA; succinate dehydrogenase (EC:1.3.5.1)
UPI0003D637EA related cluster n=1 Tax=unknown RepID=UPI0003D637EA
Uncharacterized protein {ECO:0000313|EMBL:ETI81765.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_019_061G1_scaffold_135_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8120..8878)
DNA (759bp) protein (253aa)
sdhC; succinate dehydrogenase subunit C (EC:1.3.99.1)
succinate dehydrogenase cytochrome b558 subunit n=1 Tax=Varibaculum cambriense RepID=UPI0003B3FB74
Succinate dehydrogenase subunit C {ECO:0000313|EMBL:ETI81766.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_019_061G1_scaffold_135_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9123..9608)
DNA (486bp) protein (162aa)
UPI0003D5AAD5 related cluster n=1 Tax=unknown RepID=UPI0003D5AAD5
Uncharacterized protein {ECO:0000313|EMBL:ETI81767.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ribosomal-protein-alanine acetyltransferase
L2_019_061G1_scaffold_135_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9616..10311)
DNA (696bp) protein (232aa)
UPI0003D5BB25 related cluster n=1 Tax=unknown RepID=UPI0003D5BB25
Uncharacterized protein {ECO:0000313|EMBL:ETI81768.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peptidase M22 glycoprotease
L2_019_061G1_scaffold_135_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10320..10862)
DNA (543bp) protein (181aa)
UPI0003D592C9 related cluster n=1 Tax=unknown RepID=UPI0003D592C9
Bifunctional ATP-binding protein/phosphotransferase {ECO:0000313|EMBL:ETI81769.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_019_061G1_scaffold_135_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10871..12034)
DNA (1164bp) protein (388aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
alanine racemase (EC:5.1.1.1)
UPI0003D656BF related cluster n=1 Tax=unknown RepID=UPI0003D656BF
L2_019_061G1_scaffold_135_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12047..13669)
DNA (1623bp) protein (541aa)
UPI0003D63B4D related cluster n=1 Tax=unknown RepID=UPI0003D63B4D
Uncharacterized protein {ECO:0000313|EMBL:ETI81771.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
carbohydrate kinase
L2_019_061G1_scaffold_135_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13694..15640)
DNA (1947bp) protein (649aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
glmS; glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
UPI0003D611BF related cluster n=1 Tax=unknown RepID=UPI0003D611BF
L2_019_061G1_scaffold_135_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15817..17157
DNA (1341bp) protein (447aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D63B4C related cluster n=1 Tax=unknown RepID=UPI0003D63B4C
phosphoglucosamine mutase
L2_019_061G1_scaffold_135_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17270..18274
DNA (1005bp) protein (335aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D6356E related cluster n=1 Tax=unknown RepID=UPI0003D6356E
pantothenate kinase
L2_019_061G1_scaffold_135_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18276..18605)
DNA (330bp) protein (110aa)
UPI0003D65236 related cluster n=1 Tax=unknown RepID=UPI0003D65236
Uncharacterized protein {ECO:0000313|EMBL:ETI81775.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
toxin-antitoxin system, toxin component, RelE family protein
L2_019_061G1_scaffold_135_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18605..18910)
DNA (306bp) protein (102aa)
UPI0003D66D33 related cluster n=1 Tax=unknown RepID=UPI0003D66D33
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:ETI81776.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA-damage-inducible protein J
L2_019_061G1_scaffold_135_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19106..19597)
DNA (492bp) protein (164aa)
UPI0003D5FDC0 related cluster n=1 Tax=unknown RepID=UPI0003D5FDC0
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S9
L2_019_061G1_scaffold_135_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19625..20071)
DNA (447bp) protein (149aa)
50S ribosomal protein L13 n=1 Tax=Varibaculum cambriense RepID=UPI0003B3FFD0
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L13
L2_019_061G1_scaffold_135_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20436..21560)
DNA (1125bp) protein (375aa)
UPI0003D5AA0F related cluster n=1 Tax=unknown RepID=UPI0003D5AA0F
Transcriptional repressor protein {ECO:0000313|EMBL:ETI81780.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_019_061G1_scaffold_135_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21693..22667
DNA (975bp) protein (325aa)
UPI0003D65D8E related cluster n=1 Tax=unknown RepID=UPI0003D65D8E
Uncharacterized protein {ECO:0000313|EMBL:ETI81781.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
sugar ABC transporter permease
L2_019_061G1_scaffold_135_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22683..23579
DNA (897bp) protein (299aa)
UPI0003D5D571 related cluster n=1 Tax=unknown RepID=UPI0003D5D571
Uncharacterized protein {ECO:0000313|EMBL:ETI81782.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
sugar ABC transporter permease
L2_019_061G1_scaffold_135_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23602..24951
DNA (1350bp) protein (450aa)
UPI0003D5955A related cluster n=1 Tax=unknown RepID=UPI0003D5955A
Uncharacterized protein {ECO:0000313|EMBL:ETI81783.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter substrate-binding protein
L2_019_061G1_scaffold_135_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24984..26609
DNA (1626bp) protein (542aa)
UPI0003D63E7F related cluster n=1 Tax=unknown RepID=UPI0003D63E7F
Uncharacterized protein {ECO:0000313|EMBL:ETI81784.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
alpha-galactosidase
L2_019_061G1_scaffold_135_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26652..27524)
DNA (873bp) protein (291aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tRNA pseudouridine synthase A (EC:5.4.99.12)
UPI0003D62668 related cluster n=1 Tax=unknown RepID=UPI0003D62668
L2_019_061G1_scaffold_135_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27524..28282)
DNA (759bp) protein (253aa)
UPI0003D68DD7 related cluster n=1 Tax=unknown RepID=UPI0003D68DD7
Uncharacterized protein {ECO:0000313|EMBL:ETI81786.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ROK family protein
L2_019_061G1_scaffold_135_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(28473..29051)
DNA (579bp) protein (193aa)
UPI0003D64ADD related cluster n=1 Tax=unknown RepID=UPI0003D64ADD
50S ribosomal protein L17 {ECO:0000256|RuleBase:RU000661}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L17
L2_019_061G1_scaffold_135_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29109..30110)
DNA (1002bp) protein (334aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D65758 related cluster n=1 Tax=unknown RepID=UPI0003D65758
DNA-directed RNA polymerase subunit alpha
L2_019_061G1_scaffold_135_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(30273..30671)
DNA (399bp) protein (133aa)
UPI0003D5C5FA related cluster n=1 Tax=unknown RepID=UPI0003D5C5FA
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S11
L2_019_061G1_scaffold_135_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(30717..31094)
DNA (378bp) protein (126aa)
UPI0003D60837 related cluster n=1 Tax=unknown RepID=UPI0003D60837
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S13
L2_019_061G1_scaffold_135_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31223..31336)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Actinomyces neuii BVS029A5 RepID=K0YUN0_9ACTO
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rpmJ; 50S ribosomal protein L36
L2_019_061G1_scaffold_135_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31380..31601)
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Varibaculum cambriense RepID=UPI0003B53AE2
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
infA; translation initiation factor IF-1
Displaying items 1-30 of 50 in total

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