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L2_019_119G1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 185 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_119G1_scaffold_4_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..147
DNA (147bp) protein (49aa)
Transposase n=2 Tax=Clostridium butyricum RepID=B1R0L6_CLOBU
Integrase family protein {ECO:0000313|EMBL:EEP56291.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L2_019_119G1_scaffold_4_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(399..2300)
DNA (1902bp) protein (634aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YX37_CLOBU
Esterase {ECO:0000313|EMBL:KHD13511.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_019_119G1_scaffold_4_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2398..2775)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AJ79_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD13512.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_019_119G1_scaffold_4_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2760..3329)
DNA (570bp) protein (190aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases (EC:4.1.1.-)
UPI0003D5E295 related cluster n=1 Tax=unknown RepID=UPI0003D5E295
L2_019_119G1_scaffold_4_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3354..4817)
DNA (1464bp) protein (488aa)
3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases (EC:4.1.1.-)
UPI0003D5C1FF related cluster n=1 Tax=unknown RepID=UPI0003D5C1FF
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000313|EMBL:ETI87602.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L2_019_119G1_scaffold_4_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4989..5852
DNA (864bp) protein (288aa)
Putative lysR substrate binding domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K824_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETI87603.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
LysR family transcriptional regulator
L2_019_119G1_scaffold_4_7
Firmicutes bacterium M10-2, Firmicutes, Bacteria

Not on your lists

comp(5919..6665)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium M10-2 RepID=R9LT27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61708.1}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
PTS sugar transporter
L2_019_119G1_scaffold_4_8
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6700..8046)
DNA (1347bp) protein (449aa)
PTS system, glucose-like IIB component n=3 Tax=Coprobacillus RepID=G9QY24_9FIRM
PTS system glucose-like IIB component {ECO:0000313|EMBL:CCZ34891.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
PTS diacetylchitobiose transporter subunit IIC
L2_019_119G1_scaffold_4_9
Listeria rocourtiae, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8492..9547
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Paenibacillus peoriae RepID=UPI00026C5C80
AraC family transcriptional regulator {ECO:0000313|EMBL:EUJ52377.1}; TaxID=1265846 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria rocourtiae FSL F6-920.;"
response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L2_019_119G1_scaffold_4_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9651..11312)
DNA (1662bp) protein (554aa)
Putative alkyl hydroperoxide reductase F subunit n=2 Tax=Clostridium butyricum RepID=B1QUU1_CLOBU
Putative alkyl hydroperoxide reductase, F subunit {ECO:0000313|EMBL:EEP56471.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
pyridine nucleotide-disulfide oxidoreductase
L2_019_119G1_scaffold_4_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11478..12041)
DNA (564bp) protein (188aa)
ahpC; alkyl hydroperoxide reductase (EC:1.11.1.15)
Peroxiredoxin n=4 Tax=Clostridium RepID=B1QUU2_CLOBU
Alkyl hydroperoxide reductase protein C {ECO:0000313|EMBL:KJZ84172.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L2_019_119G1_scaffold_4_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12285..13442)
DNA (1158bp) protein (386aa)
1,3-propanediol dehydrogenase {ECO:0000313|EMBL:ABI30639.2}; EC=1.1.1.202 {ECO:0000313|EMBL:ABI30639.2};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
dhaT; 1,3-propanediol dehydrogenase (EC:1.1.1.202)
1,3-propanediol dehydrogenase n=3 Tax=Clostridium butyricum RepID=M8JF26_CLOBU
L2_019_119G1_scaffold_4_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13502..14416)
DNA (915bp) protein (305aa)
Glycerol dehydratase activator n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDQ5_CLOBU
Radical SAM protein {ECO:0000313|EMBL:KHD14059.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
pflC; glycerol dehydratase activator
L2_019_119G1_scaffold_4_14
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14444..16855)
DNA (2412bp) protein (804aa)
Pyruvate formate-lyase n=2 Tax=Clostridium butyricum RepID=B1QUU5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ93149.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
pyruvate formate-lyase
L2_019_119G1_scaffold_4_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17114..18169)
DNA (1056bp) protein (352aa)
Two-component response regulator n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K8H1_CLOBU
AraC family transcriptional regulator {ECO:0000313|EMBL:KHD14057.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
two-component response regulator
L2_019_119G1_scaffold_4_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18179..19396)
DNA (1218bp) protein (406aa)
Two-component sensor histidine kinase n=2 Tax=Clostridium butyricum RepID=B1QUU7_CLOBU
Two-component sensor histidine kinase {ECO:0000313|EMBL:EEP56412.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
sensor histidine kinase
L2_019_119G1_scaffold_4_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19636..20022)
DNA (387bp) protein (129aa)
Dihydroxyacetone kinase, phosphotransfer subunit n=3 Tax=Clostridium butyricum RepID=B1QUU8_CLOBU
PTS mannose transporter subunit IID {ECO:0000313|EMBL:KHD14055.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
dihydroxyacetone kinase, phosphotransfer subunit
L2_019_119G1_scaffold_4_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20034..20663)
DNA (630bp) protein (210aa)
putative kinase (EC:2.7.-.-)
Dihydroxyacetone kinase, L subunit n=2 Tax=Clostridium butyricum RepID=B1QUU9_CLOBU
Dihydroxyacetone kinase {ECO:0000313|EMBL:KHD14054.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L2_019_119G1_scaffold_4_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20688..21683)
DNA (996bp) protein (332aa)
dhaK; dihydroxyacetone kinase subunit DhaK (EC:2.7.1.-)
Dihydroxyacetone kinase, DhaK subunit n=2 Tax=Clostridium butyricum RepID=M8K0E3_CLOBU
Dihydroxyacetone kinase {ECO:0000313|EMBL:KHD14053.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L2_019_119G1_scaffold_4_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21683..22825)
DNA (1143bp) protein (381aa)
Glycerol dehydrogenase {ECO:0000313|EMBL:KHD14052.1}; EC=1.1.1.6 {ECO:0000313|EMBL:KHD14052.1};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
gldA; glycerol dehydrogenase (EC:1.1.1.6)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YX56_CLOBU
L2_019_119G1_scaffold_4_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23116..24174)
DNA (1059bp) protein (353aa)
DhaY n=1 Tax=Clostridium sp. IBUN 13A RepID=F8UMA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJZ84158.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pocR; regulatory protein PocR
L2_019_119G1_scaffold_4_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24321..25778)
DNA (1458bp) protein (486aa)
UPI0003A7121F related cluster n=1 Tax=unknown RepID=UPI0003A7121F
Multidrug MFS transporter {ECO:0000313|EMBL:KHD14050.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
MDR-type permease
L2_019_119G1_scaffold_4_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25778..26227)
DNA (450bp) protein (150aa)
UPI0003D65197 related cluster n=1 Tax=unknown RepID=UPI0003D65197
Transcriptional regulator, MarR/EmrR family {ECO:0000313|EMBL:ETI87607.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
MarR-family transcriptional regulator
L2_019_119G1_scaffold_4_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26418..27215)
DNA (798bp) protein (266aa)
UPI0003D5B009 related cluster n=1 Tax=unknown RepID=UPI0003D5B009
Homocitrate synthase 1 {ECO:0000313|EMBL:ETI87608.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
homocitrate synthase
L2_019_119G1_scaffold_4_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27190..28137)
DNA (948bp) protein (316aa)
UPI0003D655C2 related cluster n=1 Tax=unknown RepID=UPI0003D655C2
Homocitrate synthase, omega subunit {ECO:0000313|EMBL:ETI87609.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
isopropylmalate/homocitrate/citramalate synthase-like protein
L2_019_119G1_scaffold_4_26
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28134..28934)
DNA (801bp) protein (267aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
EpsD family peptidyl-prolyl cis-trans isomerase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YXT2_CLOBU
peptidil-prolyl cis-trans isomerase
L2_019_119G1_scaffold_4_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28906..31602)
DNA (2697bp) protein (899aa)
UPI0003D669A0 related cluster n=1 Tax=unknown RepID=UPI0003D669A0
NifN-B {ECO:0000313|EMBL:ETI87611.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
NifN-B
L2_019_119G1_scaffold_4_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31587..32924)
DNA (1338bp) protein (446aa)
UPI0003D5EB3C related cluster n=1 Tax=unknown RepID=UPI0003D5EB3C
Nitrogenase MoFe cofactor biosynthesis protein NifE {ECO:0000313|EMBL:ETI87612.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
nifE; Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
L2_019_119G1_scaffold_4_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33115..34482)
DNA (1368bp) protein (456aa)
nifK; Nitrogenase molybdenum-iron protein beta chain (EC:1.18.6.1)
UPI0003D63439 related cluster n=1 Tax=unknown RepID=UPI0003D63439
Nitrogenase molybdenum-iron protein beta chain {ECO:0000313|EMBL:ETI87613.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L2_019_119G1_scaffold_4_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34485..36074)
DNA (1590bp) protein (530aa)
Nitrogenase protein alpha chain {ECO:0000256|RuleBase:RU004022}; EC=1.18.6.1 {ECO:0000256|RuleBase:RU004022};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
nifD; Nitrogenase molybdenum-iron protein alpha chain (EC:1.18.6.1)
UPI0003D697AA related cluster n=1 Tax=unknown RepID=UPI0003D697AA
Displaying items 1-30 of 185 in total

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