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L2_019_119G1_scaffold_242

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_119G1_scaffold_242_1
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(126..1220)
DNA (1095bp) protein (365aa)
Ribosome-binding ATPase YchF n=5 Tax=Bifidobacterium RepID=E8MHV9_BIFL2
GTPase
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
L2_019_119G1_scaffold_242_2
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1238..2038)
DNA (801bp) protein (267aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XX56_9BIFI
pyrroline-5-carboxylate reductase
L2_019_119G1_scaffold_242_3
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2083..3426)
DNA (1344bp) protein (448aa)
Hydrolase, alpha/beta domain protein n=2 Tax=Bifidobacterium RepID=C0BVI7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16557.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
proline iminopeptidase
L2_019_119G1_scaffold_242_4
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3604..6213
DNA (2610bp) protein (870aa)
Histidine kinase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BVI6_9BIFI
Histidine kinase {ECO:0000313|EMBL:EEG69977.1}; Two-component sensor kinase {ECO:0000313|EMBL:BAR03353.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
two-component sensor kinase
L2_019_119G1_scaffold_242_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6290..7036
DNA (747bp) protein (249aa)
Response regulator receiver domain protein n=2 Tax=Bifidobacterium RepID=C0BVI5_9BIFI
Response regulator receiver domain protein {ECO:0000313|EMBL:EEG69976.1}; Two-component response regulator {ECO:0000313|EMBL:BAR03352.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
response regulator
L2_019_119G1_scaffold_242_6
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7128..9770)
DNA (2643bp) protein (881aa)
Efflux ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=C0BVI4_9BIFI
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEG69975.1}; Putative transport protein {ECO:0000313|EMBL:BAR03351.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
ABC transporter permease
L2_019_119G1_scaffold_242_7
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9812..10603)
DNA (792bp) protein (264aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium RepID=C0BVI3_9BIFI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG69974.1}; Putative ABC transporter ATP-binding component {ECO:0000313|EMBL:BAR03350.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
peptide ABC transporter ATP-binding protein
L2_019_119G1_scaffold_242_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10736..11755)
DNA (1020bp) protein (340aa)
Transcriptional regulator, AsnC family n=2 Tax=Bifidobacterium RepID=C0BVI2_9BIFI
Transcriptional regulator {ECO:0000313|EMBL:BAR03349.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
AsnC family transcriptional regulator
L2_019_119G1_scaffold_242_9
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11764..12582)
DNA (819bp) protein (273aa)
Cobalt transport protein n=2 Tax=Bifidobacterium RepID=C0BVI1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16563.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
cobalt transporter
L2_019_119G1_scaffold_242_10
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12582..14189)
DNA (1608bp) protein (536aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P7F8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16564.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
cobalt ABC transporter ATPase
L2_019_119G1_scaffold_242_11
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14312..14863)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BVH9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16565.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L2_019_119G1_scaffold_242_12
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15123..16439)
DNA (1317bp) protein (439aa)
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NER7_9BIFI
O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:CCY95866.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
O-acetylhomoserine (thiol)-lyase
L2_019_119G1_scaffold_242_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16912..17784
DNA (873bp) protein (291aa)
Pyridoxal/pyridoxine/pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
Pyridoxal/pyridoxine/pyridoxamine kinase n=11 Tax=Bifidobacterium RepID=D6D917_BIFLN
L2_019_119G1_scaffold_242_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18020..18523
DNA (504bp) protein (168aa)
UPF0102 protein BLJ_0797 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZTQ7_BIFLJ
hypothetical protein
UPF0102 protein BLIC_a01851 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
L2_019_119G1_scaffold_242_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18582..20117
DNA (1536bp) protein (512aa)
Mg chelatase-related protein n=15 Tax=Bifidobacterium RepID=D6D919_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:AEI97745.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
hypothetical protein
L2_019_119G1_scaffold_242_16
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20114..21814
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NFC5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95862.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hypothetical protein
L2_019_119G1_scaffold_242_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21871..23736
DNA (1866bp) protein (622aa)
SdhA n=16 Tax=Bifidobacterium RepID=E4QZ84_BIFLM
succinate dehydrogenase flavoprotein subunit
Succinate dehydrogenase {ECO:0000313|EMBL:AIW43633.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L2_019_119G1_scaffold_242_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23832..24797
DNA (966bp) protein (322aa)
succinate dehydrogenase subunit B (EC:1.3.5.1 1.3.99.1)
Succinate dehydrogenase subunit B {ECO:0000313|EMBL:CBK70675.1}; EC=1.3.5.1 {ECO:0000313|EMBL:CBK70675.1};; EC=1.3.99.1 {ECO:0000313|EMBL:CBK70675.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Succinate dehydrogenase subunit B n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6D922_BIFLN
L2_019_119G1_scaffold_242_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24876..25556
DNA (681bp) protein (227aa)
Methyltransferase n=16 Tax=Bifidobacterium RepID=F8AR05_BIFLN
methyltransferase
O-methyltransferase {ECO:0000313|EMBL:EEI81481.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L2_019_119G1_scaffold_242_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25602..26543)
DNA (942bp) protein (314aa)
TIGR00730 family protein n=9 Tax=Bifidobacterium RepID=C5EAF9_BIFLI
hypothetical protein
DNA-binding protein {ECO:0000313|EMBL:AIW43630.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L2_019_119G1_scaffold_242_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26776..28194)
DNA (1419bp) protein (473aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MWN7_9BIFI
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
kefB; kefb
L2_019_119G1_scaffold_242_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28675..30093)
DNA (1419bp) protein (473aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=13 Tax=Bifidobacterium RepID=D6D926_BIFLN
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
ATP-dependent Clp protease ATP-binding subunit
L2_019_119G1_scaffold_242_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30215..30916)
DNA (702bp) protein (234aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
ATP-dependent Clp protease proteolytic subunit 1 n=15 Tax=Bifidobacterium RepID=CLPP1_BIFLO
L2_019_119G1_scaffold_242_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30922..31455)
DNA (534bp) protein (178aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
ATP-dependent Clp protease proteolytic subunit 2 n=21 Tax=Bifidobacterium RepID=CLPP2_BIFLO
clpP2; clpp2
Displaying 24 items

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