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L2_019_244G1_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_019_244G1_scaffold_41_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1465
DNA (1464bp) protein (488aa)
HsdR-like protein type I restriction modification system (EC:3.1.21.3)
HsdR-like protein type I restriction modification system n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IM69_BIFBI
HsdR-like protein type I restriction modification system {ECO:0000313|EMBL:EKE49850.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_019_244G1_scaffold_41_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1619..3106
DNA (1488bp) protein (496aa)
argH; argininosuccinate lyase ArgH (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Argininosuccinate lyase n=6 Tax=Bifidobacterium RepID=E3ER22_BIFBS
L2_019_244G1_scaffold_41_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3240..3827
DNA (588bp) protein (196aa)
HD domain protein n=4 Tax=Bifidobacterium RepID=U2BZX1_BIFBI
putative HD superfamily hydrolase
Hydrolase (HAD superfamily) {ECO:0000313|EMBL:KFI43174.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_019_244G1_scaffold_41_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3827..4606
DNA (780bp) protein (260aa)
Transporter n=4 Tax=Bifidobacterium bifidum RepID=E4NXD4_BIFBP
transporter
Transporter {ECO:0000313|EMBL:EKF15231.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_019_244G1_scaffold_41_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4743..6065
DNA (1323bp) protein (441aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Tyrosine--tRNA ligase n=4 Tax=Bifidobacterium RepID=E3ER19_BIFBS
tyrS; tyrosyl-tRNA synthetase
L2_019_244G1_scaffold_41_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6233..6730)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVE8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83746.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
putative membrane glycoprotein
L2_019_244G1_scaffold_41_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6842..8011
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H8K3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22552.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_019_244G1_scaffold_41_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8017..9051
DNA (1035bp) protein (345aa)
Haloacid dehalogenase-like hydrolase (HAD superfamily) {ECO:0000313|EMBL:KFI43170.1}; EC=3.1.3.18 {ECO:0000313|EMBL:KFI43170.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
HAD hydrolase, family IIA n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BZW7_BIFBI
nagD; N-acetylglucosamine-6-phosphate deacetylase
L2_019_244G1_scaffold_41_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9132..9260
DNA (129bp) protein (43aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WIE8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83743.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_019_244G1_scaffold_41_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9309..10067
DNA (759bp) protein (253aa)
Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains n=6 Tax=Bifidobacterium RepID=E4NXD0_BIFBP
hemolysinIII-like protein
Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains {ECO:0000313|EMBL:CDB22555.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_019_244G1_scaffold_41_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10103..10777)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIE6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04659.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_019_244G1_scaffold_41_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10925..11578)
DNA (654bp) protein (218aa)
TrkA family potassium uptake protein n=7 Tax=Bifidobacterium RepID=E4NXC8_BIFBP
potassium uptake protein
TrkA family potassium uptake protein {ECO:0000313|EMBL:CDB22557.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_019_244G1_scaffold_41_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11759..13222)
DNA (1464bp) protein (488aa)
TrkH family potassium uptake protein {ECO:0000313|EMBL:KFI43166.1}; EC=3.6.3.14 {ECO:0000313|EMBL:KFI43166.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Cation transport protein n=2 Tax=Bifidobacterium bifidum RepID=U2BZW4_BIFBI
putative cation transporter
L2_019_244G1_scaffold_41_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13483..14457
DNA (975bp) protein (325aa)
ATP-NAD kinase (EC:2.7.1.23)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=6 Tax=Bifidobacterium RepID=E3ER09_BIFBS
L2_019_244G1_scaffold_41_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14450..16216
DNA (1767bp) protein (589aa)
DNA repair protein RecN n=7 Tax=Bifidobacterium RepID=E3ER08_BIFBS
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
recN; DNA repair protein RecN
L2_019_244G1_scaffold_41_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16275..16934
DNA (660bp) protein (220aa)
HAD hydrolase, family IA, variant 3 n=3 Tax=Bifidobacterium bifidum RepID=E4VA68_BIFBI
Phosphatase {ECO:0000313|EMBL:EKF15533.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
yqaB; phosphatase
L2_019_244G1_scaffold_41_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17055..17429
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=7 Tax=Bifidobacterium RepID=E3ER06_BIFBS
fatty acyl-responsive regulator
Fatty acyl-responsive regulator {ECO:0000313|EMBL:AFL04653.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_019_244G1_scaffold_41_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17525..18484
DNA (960bp) protein (320aa)
ABC transporter ATP-binding protein (EC:3.6.3.25)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium RepID=E4NXC2_BIFBP
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB22563.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_019_244G1_scaffold_41_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18468..19208
DNA (741bp) protein (247aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2IMH8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE49950.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_019_244G1_scaffold_41_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19210..19920
DNA (711bp) protein (237aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WID7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43159.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_019_244G1_scaffold_41_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19954..21441)
DNA (1488bp) protein (496aa)
Threonine synthase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMV4_9BIFI
thrC; threonine synthase
Threonine synthase {ECO:0000313|EMBL:CDB22566.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_019_244G1_scaffold_41_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21637..22935
DNA (1299bp) protein (433aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Gamma-glutamyl phosphate reductase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WID5_BIFBI
L2_019_244G1_scaffold_41_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22932..23483
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GAX5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22568.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_019_244G1_scaffold_41_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23480..24238
DNA (759bp) protein (253aa)
nadD; nicotinate-nucleotide adenylyltransferase NadD (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Probable nicotinate-nucleotide adenylyltransferase n=3 Tax=Bifidobacterium RepID=E4NXB6_BIFBP
L2_019_244G1_scaffold_41_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24373..25395
DNA (1023bp) protein (341aa)
ribose-phosphate pyrophosphokinase PrsA (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Ribose-phosphate pyrophosphokinase n=3 Tax=Bifidobacterium bifidum RepID=E4NXB5_BIFBP
L2_019_244G1_scaffold_41_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25653..26987
DNA (1335bp) protein (445aa)
Bifunctional protein GlmU n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMV7_9BIFI
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glmU; UDP-N-acetylglucosamine pyrophosphorylase
L2_019_244G1_scaffold_41_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26992..27429
DNA (438bp) protein (146aa)
Ribosomal silencing factor RsfS n=3 Tax=Bifidobacterium RepID=K2M3P3_BIFBI
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative Iojap protein
L2_019_244G1_scaffold_41_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27407..28144
DNA (738bp) protein (246aa)
Phosphoglycerate mutase n=2 Tax=Bifidobacterium RepID=R6GAX7_9BIFI
Phosphoglycerate mutase {ECO:0000313|EMBL:CDB22573.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
gpm4; phosphoglycerate mutase
L2_019_244G1_scaffold_41_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28281..28724
DNA (444bp) protein (148aa)
Transmembrane protein n=8 Tax=Bifidobacterium RepID=E3EQZ4_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE49960.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_019_244G1_scaffold_41_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28785..30047
DNA (1263bp) protein (421aa)
putative cyclomaltodextrinase or neopullalanase (EC:3.2.1.135)
Alpha amylase, catalytic domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2DQ67_BIFBI
Putative alpha-amylase {ECO:0000313|EMBL:BAQ98315.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 91 in total

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