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L2_021_000G1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 357 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_2_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1594)
DNA (1593bp) protein (531aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_01904}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_01904};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_01904};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_01904};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
ppcA; phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=3 Tax=Clostridium perfringens RepID=B1BFT5_CLOPF
L2_021_000G1_scaffold_2_2
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1899..3194
DNA (1296bp) protein (432aa)
4-hydroxybutyrate CoA transferase n=1 Tax=Clostridium arbusti RepID=UPI00028A38B1
acetyl-CoA hydrolase/transferase
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:AKA70746.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L2_021_000G1_scaffold_2_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3244..4584)
DNA (1341bp) protein (447aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=9 Tax=Clostridium perfringens RepID=MIAB_CLOP1
miaB; (dimethylallyl)adenosine tRNA methylthiotransferase
L2_021_000G1_scaffold_2_4
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4983..5888)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88644.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L2_021_000G1_scaffold_2_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6240..6752
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=Q8XLF2_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80796.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_000G1_scaffold_2_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6798..7262)
DNA (465bp) protein (155aa)
Putative membrane protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BWT5_CLOPF
Putative membrane protein {ECO:0000313|EMBL:EDT13833.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
hypothetical protein
L2_021_000G1_scaffold_2_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7401..7973)
DNA (573bp) protein (191aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=Q8XLF4_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80794.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_000G1_scaffold_2_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8110..8259
DNA (150bp) protein (50aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CVE7_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA17265.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_021_000G1_scaffold_2_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8360..9154)
DNA (795bp) protein (265aa)
Acetyltransferase n=3 Tax=Clostridium perfringens RepID=H7CVE6_CLOPF
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDT13831.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
acetyltransferase
L2_021_000G1_scaffold_2_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9263..10111)
DNA (849bp) protein (283aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Clostridium perfringens RepID=B1BFU4_CLOPF
L2_021_000G1_scaffold_2_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10113..10766)
DNA (654bp) protein (218aa)
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Cytidylate kinase n=9 Tax=Clostridium perfringens RepID=KCY_CLOP1
L2_021_000G1_scaffold_2_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10888..12108)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RT59_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT13853.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
hypothetical protein
L2_021_000G1_scaffold_2_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12325..13200)
DNA (876bp) protein (292aa)
RpiR family transcriptional regulator n=10 Tax=Clostridium perfringens RepID=H7CVE2_CLOPF
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EDS81329.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_021_000G1_scaffold_2_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13232..13783)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1RC41_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT22201.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L2_021_000G1_scaffold_2_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13789..14499)
DNA (711bp) protein (237aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Pseudouridine synthase n=2 Tax=Clostridium perfringens RepID=B1RJS2_CLOPF
pseudouridylate synthase
L2_021_000G1_scaffold_2_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14715..15533
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CQE9_CLOPF
AP endonuclease {ECO:0000313|EMBL:EIA17257.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
AP endonuclease
L2_021_000G1_scaffold_2_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15848..16342
DNA (495bp) protein (165aa)
PadR family transcriptional regulator n=7 Tax=Clostridium perfringens RepID=H7CVD7_CLOPF
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EDT25508.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_021_000G1_scaffold_2_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16442..17257)
DNA (816bp) protein (272aa)
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=3 Tax=Clostridium perfringens RepID=ACCA_CLOP1
L2_021_000G1_scaffold_2_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17250..18128)
DNA (879bp) protein (293aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=6 Tax=Clostridium perfringens RepID=ACCD_CLOP1
L2_021_000G1_scaffold_2_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18121..19473)
DNA (1353bp) protein (451aa)
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:EDT71013.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EDT71013.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
accC; biotin carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase n=3 Tax=Clostridium perfringens RepID=B1RRF7_CLOPF
L2_021_000G1_scaffold_2_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19485..19904)
DNA (420bp) protein (140aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=10 Tax=Clostridium perfringens RepID=FABZ_CLOP1
L2_021_000G1_scaffold_2_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19907..20398)
DNA (492bp) protein (164aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=6 Tax=Clostridium perfringens RepID=H7CVD2_CLOPF
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EDT71033.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L2_021_000G1_scaffold_2_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20410..21651)
DNA (1242bp) protein (414aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Tax=Clostridium perfringens RepID=H7CVD1_CLOPF
L2_021_000G1_scaffold_2_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21666..22406)
DNA (741bp) protein (247aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EDT71029.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EDT71029.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=2 Tax=Clostridium perfringens RepID=B1RRG1_CLOPF
L2_021_000G1_scaffold_2_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22410..23354)
DNA (945bp) protein (315aa)
fabD; malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Malonyl CoA-acyl carrier protein transacylase n=2 Tax=Clostridium perfringens RepID=Q0TRG9_CLOP1
L2_021_000G1_scaffold_2_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23451..24425)
DNA (975bp) protein (325aa)
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000255|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000255|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; Short=KAS III {ECO:0000255|HAMAP-Rule:MF_01815};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=FABH_CLOP1
L2_021_000G1_scaffold_2_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24427..24891)
DNA (465bp) protein (155aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium perfringens RepID=Q0TRH1_CLOP1
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EDT25510.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_021_000G1_scaffold_2_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25063..25563)
DNA (501bp) protein (167aa)
Cytidine/deoxycytidylate deaminase family protein n=2 Tax=Clostridium perfringens RepID=Q0TRH2_CLOP1
cytidine/deoxycytidylate deaminase
Cytidine/deoxycytidylate deaminase family protein {ECO:0000313|EMBL:EDT25509.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_021_000G1_scaffold_2_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25644..26450)
DNA (807bp) protein (269aa)
Electron transport complex, rnfabcdge type, B subunit n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CQD5_CLOPF
Electron transport complex, RnfABCDGE type, B subunit {ECO:0000313|EMBL:EDT71024.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
rnfB; ferredoxin
L2_021_000G1_scaffold_2_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26467..27042)
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit n=7 Tax=Clostridium perfringens RepID=H7CVC4_CLOPF
rnfA; RnfABCDGE type electron transport complex subunit A
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Displaying items 1-30 of 357 in total

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