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L2_021_000G1_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_35_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1614)
DNA (1614bp) protein (538aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Probable phosphoketolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQW1_BIFBS
xylulose-5-phosphate/Fructose-6-phosphate phosphoketolase
L2_021_000G1_scaffold_35_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2143..3705
DNA (1563bp) protein (521aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
GMP synthase [glutamine-hydrolyzing] n=4 Tax=Bifidobacterium bifidum RepID=E3EQW0_BIFBS
guaA; GMP synthase
L2_021_000G1_scaffold_35_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4248..5144)
DNA (897bp) protein (299aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHJ2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53001.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5223..5441)
DNA (219bp) protein (73aa)
Phage transcriptional regulator n=3 Tax=Bifidobacterium bifidum RepID=I3WHJ1_BIFBI
alpA; phage transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ADO52999.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6053..6694
DNA (642bp) protein (214aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHJ0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52998.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7502..8173)
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHI7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52996.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8740..10221
DNA (1482bp) protein (494aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHI6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04349.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_35_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10218..12032
DNA (1815bp) protein (605aa)
phosphate acetyltransferase n=1 Tax=Bifidobacterium bifidum RepID=UPI00035EE886
pta; phosphate acetyltransferase
Phosphate acetyltransferase {ECO:0000313|EMBL:ADO52994.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12313..13542
DNA (1230bp) protein (410aa)
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Acetate kinase n=6 Tax=Bifidobacterium RepID=I3WHI4_BIFBI
L2_021_000G1_scaffold_35_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13656..15167)
DNA (1512bp) protein (504aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
aroA; 3-phosphoshikimate 1-carboxyvinyl transferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEM7_BIFBI
L2_021_000G1_scaffold_35_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15208..15825
DNA (618bp) protein (206aa)
peptidase E (EC:3.4.13.21)
Peptidase family S51 n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V956_BIFBI
Peptidase family S51 {ECO:0000313|EMBL:EFR50148.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_000G1_scaffold_35_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16369..17019
DNA (651bp) protein (217aa)
Integrase/recombinase (XerD/RipX family) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P174_BIFBP
integrase/recombinase
Integrase/recombinase {ECO:0000313|EMBL:EKE51407.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_021_000G1_scaffold_35_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17683..18900
DNA (1218bp) protein (406aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQU7_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52989.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18976..21147)
DNA (2172bp) protein (724aa)
glgX; glycogen operon protein GlgX (EC:3.2.1.68)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Glycogen operon protein glgX n=4 Tax=Bifidobacterium RepID=E3EQU6_BIFBS
L2_021_000G1_scaffold_35_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21212..21910)
DNA (699bp) protein (233aa)
Phosphohydrolase, MutT/nudix family n=2 Tax=Bifidobacterium bifidum RepID=E3EQU5_BIFBS
phosphohydrolase
Phosphohydrolase {ECO:0000313|EMBL:EKF15739.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_35_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21964..22881)
DNA (918bp) protein (306aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHH7_BIFBI
hypothetical protein
L2_021_000G1_scaffold_35_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22938..25769)
DNA (2832bp) protein (944aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EFR50133.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFR50133.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
polA; DNA polymerase I (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V941_BIFBI
L2_021_000G1_scaffold_35_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25766..26542)
DNA (777bp) protein (259aa)
Transcriptional regulator n=8 Tax=Bifidobacterium RepID=E3EQU2_BIFBS
amiR; putative two-component system responseregulator
Transcriptional regulator {ECO:0000313|EMBL:ADO52984.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_35_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26950..27549
DNA (600bp) protein (200aa)
aspA; ADP-ribose pyrophosphatase (EC:3.6.1.13)
AspA ADP-ribose pyrophosphatase n=5 Tax=Bifidobacterium RepID=E4P167_BIFBP
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EKF16358.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_35_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27758..29200)
DNA (1443bp) protein (481aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Pyruvate kinase n=7 Tax=Bifidobacterium RepID=E3EQU0_BIFBS
pyk; Pyruvate kinase
L2_021_000G1_scaffold_35_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29342..30343)
DNA (1002bp) protein (334aa)
TerC Tellurium resistance protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P165_BIFBP
terC; tellurium resistance protein
TerC Tellurium resistance protein {ECO:0000313|EMBL:CDB22257.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_35_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30379..32490)
DNA (2112bp) protein (704aa)
UvrABC system protein B n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M5L2_BIFBI
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
uvrB; excinuclease ABC subunit B
L2_021_000G1_scaffold_35_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32669..33277)
DNA (609bp) protein (203aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V935_BIFBI
L2_021_000G1_scaffold_35_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(33601..35073)
DNA (1473bp) protein (491aa)
rpsA; 30S ribosomal protein S1 (EC:1.17.1.2)
30S ribosomal protein S1 n=3 Tax=Bifidobacterium bifidum RepID=E4P162_BIFBP
30S ribosomal protein S1 {ECO:0000313|EMBL:AFL04332.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_35_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35221..36096)
DNA (876bp) protein (292aa)
folD; 5, 10-methylene-tetrahydrofolatedehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=5 Tax=Bifidobacterium bifidum RepID=I3WHG8_BIFBI
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_000G1_scaffold_35_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36159..37253
DNA (1095bp) protein (365aa)
Zinc-binding lipo protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHG7_BIFBI
adcA; zinc-binding lipo protein
Zinc-binding lipo protein {ECO:0000313|EMBL:EKF16351.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_35_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37421..38311
DNA (891bp) protein (297aa)
phnC; phosphonates import ATP-binding protein (EC:3.6.3.28)
Solute-binding protein of ABC transporter system for metals n=4 Tax=Bifidobacterium bifidum RepID=E4P159_BIFBP
Phosphonates import ATP-binding protein {ECO:0000313|EMBL:EKF16350.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_35_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38308..39144
DNA (837bp) protein (279aa)
Zinc/manganese transport system, permease protein n=8 Tax=Bifidobacterium RepID=E3EQT2_BIFBS
zinc/manganese ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:EFR50121.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_000G1_scaffold_35_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39155..39637)
DNA (483bp) protein (161aa)
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=4 Tax=Bifidobacterium bifidum RepID=I3WHG4_BIFBI
L2_021_000G1_scaffold_35_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39650..40246)
DNA (597bp) protein (199aa)
Transcriptional regulator, CarD family n=8 Tax=Bifidobacterium RepID=E3EQT0_BIFBS
CarD family transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EKE49923.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Displaying items 1-30 of 118 in total

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