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L2_021_000G1_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_71_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(395..805)
DNA (411bp) protein (137aa)
RNA binding protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP31_CLOSA
RNA binding protein
RNA binding protein {ECO:0000313|EMBL:AGX41197.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_021_000G1_scaffold_71_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(948..1244)
DNA (297bp) protein (99aa)
Septum formation initiator n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U506_9CLOT
Septum formation initiator {ECO:0000313|EMBL:EKQ55972.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
septum formation initiator
L2_021_000G1_scaffold_71_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1322..1714)
DNA (393bp) protein (131aa)
Spore cortex biosynthesis protein YabQ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKQ6_CLOSA
yabQ; spore cortex biosynthesis protein YabQ
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:AGX41195.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_021_000G1_scaffold_71_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1724..2017)
DNA (294bp) protein (98aa)
YabP family protein n=2 Tax=Clostridium RepID=A6LPK3_CLOB8
YabP family protein
YabP family protein {ECO:0000313|EMBL:AJG96806.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L2_021_000G1_scaffold_71_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2122..2382)
DNA (261bp) protein (87aa)
S4 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1T4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
L2_021_000G1_scaffold_71_6
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2452..2727)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Clostridium tetani 12124569 RepID=U6ES41_CLOTA
Uncharacterized protein {ECO:0000313|EMBL:KAJ50822.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
hup; DNA-binding protein HU
L2_021_000G1_scaffold_71_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2962..4407)
DNA (1446bp) protein (482aa)
MazG family protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXJ0_9CLOT
MazG family protein {ECO:0000313|EMBL:EHI97068.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
MazG family protein
L2_021_000G1_scaffold_71_8
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4424..5959)
DNA (1536bp) protein (512aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T818_9CLOT
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EKQ55978.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
spoVB1; stage V sporulation protein B
L2_021_000G1_scaffold_71_9
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6073..6624)
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=4 Tax=Clostridium butyricum RepID=B1R1T8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92924.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
spoVT; stage V sporulation protein T
L2_021_000G1_scaffold_71_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6882..7997)
DNA (1116bp) protein (372aa)
prsA; peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Putative peptidyl-prolyl cis-trans isomerase n=2 Tax=Clostridium botulinum B RepID=B2TI12_CLOBB
L2_021_000G1_scaffold_71_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8074..11589)
DNA (3516bp) protein (1172aa)
mfd; transcription-repair-coupling factor Mfd (EC:3.6.4.-)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Transcription-repair-coupling factor n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK40_CLOSA
L2_021_000G1_scaffold_71_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11592..12167)
DNA (576bp) protein (192aa)
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Peptidyl-tRNA hydrolase Pth n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKX4_CLOSA
L2_021_000G1_scaffold_71_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12185..13600)
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Integral membrane sensor signal transduction histidine kinase n=2 Tax=Clostridium RepID=A6LPJ4_CLOB8
integral membrane sensor signal transduction histidine kinase
L2_021_000G1_scaffold_71_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13600..14286)
DNA (687bp) protein (229aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=A6LPJ3_CLOB8
two component transcriptional regulator
Two component transcriptional regulator {ECO:0000313|EMBL:AJG96796.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L2_021_000G1_scaffold_71_15
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14508..15473)
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Clostridium RepID=A6LPJ2_CLOB8
ribose-phosphate pyrophosphokinase
L2_021_000G1_scaffold_71_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15523..16893)
DNA (1371bp) protein (457aa)
glmU: bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK35_CLOSA
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_021_000G1_scaffold_71_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17052..17327)
DNA (276bp) protein (92aa)
Putative septation protein SpoVG n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZD6_CLOBU
SpoVG family protein
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L2_021_000G1_scaffold_71_18
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17617..18432)
DNA (816bp) protein (272aa)
Purine operon repressor, PurR n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXH9_9CLOT
Purine operon repressor, PurR {ECO:0000313|EMBL:EHI97057.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
pur operon repressor
L2_021_000G1_scaffold_71_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18824..20203
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=4 Tax=Clostridium butyricum RepID=B1R1U8_CLOBU
L2_021_000G1_scaffold_71_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20295..21371)
DNA (1077bp) protein (359aa)
Proline dipeptidase n=4 Tax=Clostridium butyricum RepID=B1R1U9_CLOBU
Proline dipeptidase {ECO:0000313|EMBL:KHD15167.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
Xaa-Pro aminopeptidase
L2_021_000G1_scaffold_71_21
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21795..22493
DNA (699bp) protein (233aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Ser/threonine protein phosphatase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FP53_CLOPA
metallophosphoesterase
L2_021_000G1_scaffold_71_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22736..24130
DNA (1395bp) protein (465aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
asnS; asparagine--tRNA ligase AsnS (EC:6.1.1.22)
Asparagine--tRNA ligase n=2 Tax=Clostridium butyricum RepID=B1R1V1_CLOBU
L2_021_000G1_scaffold_71_23
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24177..24650)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSW5_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42527.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_021_000G1_scaffold_71_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24946..25911
DNA (966bp) protein (322aa)
ykoT1; glycosyltransferase YkoT (EC:2.4.-.-)
Glycosyltransferase YkoT {ECO:0000313|EMBL:AGX41167.1}; EC=2.4.-.- {ECO:0000313|EMBL:AGX41167.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Glycosyltransferase YkoT n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP00_CLOSA
L2_021_000G1_scaffold_71_25
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25922..26329
DNA (408bp) protein (136aa)
GtrA family protein n=2 Tax=Clostridium RepID=A6LWF7_CLOB8
GtrA family protein {ECO:0000313|EMBL:AJG99564.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
GtrA family protein
L2_021_000G1_scaffold_71_26
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26392..27006)
DNA (615bp) protein (205aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T842_9CLOT
3-methyladenine DNA glycosylase
L2_021_000G1_scaffold_71_27
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27243..28193)
DNA (951bp) protein (317aa)
LacX protein n=2 Tax=Clostridium butyricum RepID=B1R1V3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92920.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
lacX; protein LacX, chromosomal
L2_021_000G1_scaffold_71_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28196..28705)
DNA (510bp) protein (170aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
anaerobic ribonucleoside-triphosphate reductase-activating protein (EC:1.97.1.-)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Clostridium butyricum RepID=M8K9B5_CLOBU
L2_021_000G1_scaffold_71_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29016..30938)
DNA (1923bp) protein (641aa)
3-isopropylmalate dehydratase large subunit 1 {ECO:0000313|EMBL:AGX41161.1}; EC=4.2.1.33 {ECO:0000313|EMBL:AGX41161.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
leuC2; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN91_CLOSA
L2_021_000G1_scaffold_71_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31005..32198)
DNA (1194bp) protein (398aa)
leuA2; 2-isopropylmalate synthase 2 (EC:2.3.3.13)
2-isopropylmalate synthase 2 {ECO:0000313|EMBL:AGX41160.1}; EC=2.3.3.13 {ECO:0000313|EMBL:AGX41160.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
2-isopropylmalate synthase 2 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKM3_CLOSA
Displaying items 1-30 of 100 in total

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