ggKbase home page

L2_021_000G1_scaffold_77

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_77_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..4200)
DNA (4200bp) protein (1400aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGL8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04031.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_77_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4582..5853
DNA (1272bp) protein (424aa)
gsh; glutamate--cysteine ligase (EC:6.3.2.2)
Glutamate--cysteine ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IN90_BIFBI
Glutamate--cysteine ligase {ECO:0000313|EMBL:EKE50155.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_021_000G1_scaffold_77_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5930..6841
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CDM4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82113.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_000G1_scaffold_77_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6864..11888)
DNA (5025bp) protein (1675aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GDW7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23643.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
CoA-substrate-specific enzyme activase
L2_021_000G1_scaffold_77_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12131..12388)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CC51_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82110.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_000G1_scaffold_77_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12476..13186)
DNA (711bp) protein (237aa)
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:EFR49820.1}; EC=1.97.1.4 {ECO:0000313|EMBL:EFR49820.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=8 Tax=Bifidobacterium RepID=E3ELY8_BIFBS
nrdG; anaerobic ribonucleoside-triphosphate reductaseactivating protein
L2_021_000G1_scaffold_77_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13338..15722)
DNA (2385bp) protein (795aa)
nrdD; anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside triphosphate reductase {ECO:0000313|EMBL:EKF15715.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EKF15715.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Anaerobic ribonucleoside-triphosphate reductase n=8 Tax=Bifidobacterium RepID=E3ELY7_BIFBS
L2_021_000G1_scaffold_77_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16019..17344
DNA (1326bp) protein (442aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Exodeoxyribonuclease 7 large subunit n=4 Tax=Bifidobacterium RepID=E4P067_BIFBP
L2_021_000G1_scaffold_77_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17458..17757
DNA (300bp) protein (100aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Exodeoxyribonuclease 7 small subunit n=8 Tax=Bifidobacterium RepID=E3ELY5_BIFBS
L2_021_000G1_scaffold_77_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18060..18989)
DNA (930bp) protein (310aa)
endonuclease n=1 Tax=Bifidobacterium bifidum RepID=UPI00036DA02B
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EFR49816.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
endonuclease/exonuclease/phosphatase
L2_021_000G1_scaffold_77_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20039..21016)
DNA (978bp) protein (326aa)
Inosine/uridine-preferring nucleoside hydrolase n=3 Tax=Bifidobacterium bifidum RepID=E3ELY3_BIFBS
iunH1; inosine/uridine-preferring nucleoside hydrolase
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:ADO52679.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_77_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21090..22457)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4V870_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49812.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
sirA; transcriptional regulator
L2_021_000G1_scaffold_77_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22636..23445)
DNA (810bp) protein (270aa)
Dinucleotide-utilizing enzyme n=4 Tax=Bifidobacterium RepID=E3ELY1_BIFBS
thiF; ThiF protein
Dinucleotide-utilizing enzyme {ECO:0000313|EMBL:ADO52677.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_77_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23661..24410
DNA (750bp) protein (250aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M321_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15485.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_77_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24463..24774)
DNA (312bp) protein (104aa)
Exopolyphosphatase n=2 Tax=Bifidobacterium RepID=R6HBW8_9BIFI
Exopolyphosphatase {ECO:0000313|EMBL:CDB23677.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
gppA; exopolyphosphatase
L2_021_000G1_scaffold_77_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25289..26485)
DNA (1197bp) protein (399aa)
aspC; aspartate amino transferase (EC:2.6.1.1)
Aspartate amino transferase n=5 Tax=Bifidobacterium RepID=I3WGK3_BIFBI
Aminotransferase {ECO:0000313|EMBL:EFR49808.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_000G1_scaffold_77_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26670..27257)
DNA (588bp) protein (196aa)
DNA mismatch endonuclease vsr n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GR04_9BIFI
DNA mismatch endonuclease vsr {ECO:0000313|EMBL:CDB23681.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
vsr; DNA mismatch endonuclease vsr
L2_021_000G1_scaffold_77_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27345..28766
DNA (1422bp) protein (474aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P057_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52672.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_77_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28950..29603)
DNA (654bp) protein (218aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Peptide deformylase n=2 Tax=Bifidobacterium bifidum RepID=E4P056_BIFBP
L2_021_000G1_scaffold_77_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29645..31126)
DNA (1482bp) protein (494aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Phosphoglucosamine mutase n=8 Tax=Bifidobacterium RepID=E3ELX4_BIFBS
L2_021_000G1_scaffold_77_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31406..33070)
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DQT9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82091.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_000G1_scaffold_77_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33610..36222)
DNA (2613bp) protein (871aa)
pepN; membrane alanine aminopeptidase PepN (EC:3.4.11.2)
PepN Membrane alanine aminopeptidase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZX5_BIFBP
Membrane alanine aminopeptidase {ECO:0000313|EMBL:CDB23694.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_77_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36388..38229)
DNA (1842bp) protein (614aa)
Metal-dependent hydrolase n=7 Tax=Bifidobacterium bifidum RepID=E4NZX4_BIFBP
ribonuclease J
Metal-dependent hydrolase {ECO:0000313|EMBL:KFI42515.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_000G1_scaffold_77_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38403..39293)
DNA (891bp) protein (297aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
4-hydroxy-tetrahydrodipicolinate synthase n=5 Tax=Bifidobacterium RepID=I3WGJ5_BIFBI
L2_021_000G1_scaffold_77_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39456..40208)
DNA (753bp) protein (251aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
4-hydroxy-tetrahydrodipicolinate reductase n=6 Tax=Bifidobacterium RepID=E3ELW8_BIFBS
L2_021_000G1_scaffold_77_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40575..40784
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HAD7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97632.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transposase
L2_021_000G1_scaffold_77_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40837..41016
DNA (180bp) protein (60aa)
DNA-damage-inducible protein J n=8 Tax=Bifidobacterium RepID=I3WGJ2_BIFBI
hypothetical protein
DNA-damage-inducible protein J {ECO:0000313|EMBL:EKF16209.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_77_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41383..41766
DNA (384bp) protein (128aa)
Oligopeptide/dipeptide transporter, C-terminal domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V852_BIFBI
Oligopeptide/dipeptide transporter, C-terminal domain protein {ECO:0000313|EMBL:EFR49794.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
ABC transporter
L2_021_000G1_scaffold_77_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41669..43087)
DNA (1419bp) protein (473aa)
Putative transport protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGJ0_BIFBI
putative transport protein
Putative transport protein {ECO:0000313|EMBL:AFL04003.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_77_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(43084..43950)
DNA (867bp) protein (289aa)
Acetyltransferase, GNAT family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CC19_BIFBI
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERI82080.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97628.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 76 in total

View Taxonomy