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L2_021_000G1_scaffold_156

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_156_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..338
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75504.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_156_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

453..827
DNA (375bp) protein (125aa)
Transcriptional regulator, ArsR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP09_9FIRM
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EFB75505.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, ArsR family
L2_021_000G1_scaffold_156_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

916..1131
DNA (216bp) protein (72aa)
Heavy metal-associated domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP10_9FIRM
Heavy metal-associated domain protein {ECO:0000313|EMBL:EFB75506.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
heavy metal associated domain-containing protein
L2_021_000G1_scaffold_156_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1198..3060
DNA (1863bp) protein (621aa)
Cadmium-exporting ATPase {ECO:0000313|EMBL:EFB75507.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EFB75507.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase (EC:3.6.3.5)
Cadmium-exporting ATPase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP11_9FIRM
L2_021_000G1_scaffold_156_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3271..4053)
DNA (783bp) protein (261aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP12_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB75508.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane proteins related to metalloendopeptidases
L2_021_000G1_scaffold_156_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4333..5946
DNA (1614bp) protein (538aa)
Peptide chain release factor 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP14_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
bacterial peptide chain release factor 3 (bRF-3)
L2_021_000G1_scaffold_156_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5962..6846
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75511.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_021_000G1_scaffold_156_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7213..8646
DNA (1434bp) protein (478aa)
Radical SAM domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP16_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EFB75512.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
radical SAM domain-containing protein
L2_021_000G1_scaffold_156_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8646..9821
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75513.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_156_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9818..11872
DNA (2055bp) protein (685aa)
ATPase, AAA family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP18_9FIRM
ATPase, AAA family {ECO:0000313|EMBL:EFB75514.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPases of the AAA+ class
L2_021_000G1_scaffold_156_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12097..13776)
DNA (1680bp) protein (560aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP19_9FIRM
L2_021_000G1_scaffold_156_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13850..14110)
DNA (261bp) protein (87aa)
ptsH1; Phosphocarrier protein HPr (EC:2.7.11.-)
Phosphocarrier, HPr family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP20_9FIRM
Phosphocarrier, HPr family {ECO:0000313|EMBL:EFB75516.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_156_13
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(14295..15068)
DNA (774bp) protein (258aa)
HAD-superfamily hydrolase subfamily IIB n=2 Tax=root RepID=R6EJP3_9FIRM
HAD-superfamily hydrolase subfamily IIB {ECO:0000313|EMBL:CDB00085.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
HAD-superfamily hydrolase, subfamily IIB
L2_021_000G1_scaffold_156_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15275..15787
DNA (513bp) protein (171aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP28_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EFB75524.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
L2_021_000G1_scaffold_156_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16004..17662)
DNA (1659bp) protein (553aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIV9_9FIRM
L2_021_000G1_scaffold_156_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17866..18885)
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H277_9FIRM
L2_021_000G1_scaffold_156_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19050..19619)
DNA (570bp) protein (190aa)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:EFB77466.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EFB77466.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIV7_9FIRM
L2_021_000G1_scaffold_156_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19630..21294)
DNA (1665bp) protein (555aa)
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EFB77465.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EFB77465.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIV6_9FIRM
L2_021_000G1_scaffold_156_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21800..22975
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77463.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted ATPase (AAA+ superfamily)
L2_021_000G1_scaffold_156_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23161..24366)
DNA (1206bp) protein (402aa)
Threonine ammonia-lyase {ECO:0000313|EMBL:EFB77462.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EFB77462.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L-threonine ammonia-lyase (EC:4.3.1.19)
Threonine ammonia-lyase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIV3_9FIRM
L2_021_000G1_scaffold_156_21
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24569..25492
DNA (924bp) protein (308aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
4-deoxy-L-threo-5-hexulose uronate isomerase (EC:5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q6W5_9FIRM
L2_021_000G1_scaffold_156_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25619..26428
DNA (810bp) protein (270aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.69)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZFN0_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFQ08008.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L2_021_000G1_scaffold_156_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26668..27579)
DNA (912bp) protein (304aa)
Aldose 1-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPT8_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:EFB75285.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Galactose mutarotase and related enzymes
L2_021_000G1_scaffold_156_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27693..29177)
DNA (1485bp) protein (495aa)
D-altronate dehydratase (EC:4.2.1.7)
SAF domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H487_9FIRM
SAF domain protein {ECO:0000313|EMBL:EEU97419.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L2_021_000G1_scaffold_156_25
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29366..30865)
DNA (1500bp) protein (500aa)
tagaturonate reductase (EC:1.1.1.58)
Tagaturonate reductase {ECO:0000313|EMBL:CBL40260.1}; EC=1.1.1.58 {ECO:0000313|EMBL:CBL40260.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Tagaturonate reductase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GR35_9FIRM
L2_021_000G1_scaffold_156_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31232..32674
DNA (1443bp) protein (481aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
D-glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPU0_9FIRM
L2_021_000G1_scaffold_156_27
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(32779..33198)
DNA (420bp) protein (140aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MX56_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDF05729.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
hypothetical protein
L2_021_000G1_scaffold_156_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33330..33800)
DNA (471bp) protein (157aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN6_9FIRM
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EFB76171.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, BadM/Rrf2 family
L2_021_000G1_scaffold_156_29
unknown

Not on your lists

33854..34072
DNA (219bp) protein (73aa)

This feature has no annotations

L2_021_000G1_scaffold_156_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34249..35139
DNA (891bp) protein (297aa)
Lipoprotein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN3_9FIRM
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type metal ion transport system, periplasmic component/surface antigen
Displaying items 1-30 of 70 in total

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