ggKbase home page

L2_021_000G1_scaffold_218

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_218_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..414)
DNA (414bp) protein (138aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Ketol-acid reductoisomerase n=7 Tax=Bifidobacterium bifidum RepID=E3ELJ5_BIFBS
ilvC1; ketol-acid reductoisomerase
L2_021_000G1_scaffold_218_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(660..2030)
DNA (1371bp) protein (457aa)
Permease n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GEJ2_9BIFI
Permease {ECO:0000313|EMBL:CDB22805.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
MFS superfamily transporter
L2_021_000G1_scaffold_218_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2621..4306)
DNA (1686bp) protein (562aa)
MFS transporter n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976620
Putative transmembrane protein {ECO:0000313|EMBL:EKE50200.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
putative transmembrane protein
L2_021_000G1_scaffold_218_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4357..4788)
DNA (432bp) protein (144aa)
sucrose phosphorylase (EC:2.4.1.7)
Sucrose phosphorylase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I611_BIFBI
Sucrose phosphorylase {ECO:0000313|EMBL:EKE50199.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_021_000G1_scaffold_218_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4871..5917)
DNA (1047bp) protein (349aa)
LacI family sucrose operon transcriptional repressor n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LG40_BIFBI
LacI family sucrose operon transcriptional repressor {ECO:0000313|EMBL:EKF16689.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
LacI family sucrose operon transcriptional repressor
L2_021_000G1_scaffold_218_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6076..6444)
DNA (369bp) protein (123aa)
Putative fluoride ion transporter CrcB n=3 Tax=Bifidobacterium bifidum RepID=E4NYH8_BIFBP
crcB; family protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_000G1_scaffold_218_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6446..7390)
DNA (945bp) protein (315aa)
Putative fluoride ion transporter CrcB n=2 Tax=Bifidobacterium bifidum RepID=E3ELI9_BIFBS
crcB1; camphor resistance protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_218_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7465..8751)
DNA (1287bp) protein (429aa)
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Adenylosuccinate synthetase n=2 Tax=Bifidobacterium bifidum RepID=E4NYH6_BIFBP
L2_021_000G1_scaffold_218_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9045..10112)
DNA (1068bp) protein (356aa)
fbaA; fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase, class II {ECO:0000313|EMBL:AFL03729.1}; EC=4.1.2.13 {ECO:0000313|EMBL:AFL03729.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Fructose-bisphosphate aldolase, class II n=2 Tax=Bifidobacterium RepID=I3WFR6_BIFBI
L2_021_000G1_scaffold_218_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10251..11540
DNA (1290bp) protein (430aa)
Polysaccharide deacetylase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7A5_BIFBI
Polysaccharide deacetylase {ECO:0000313|EMBL:EFR49512.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
polysaccharide deacetylase
L2_021_000G1_scaffold_218_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11787..12725)
DNA (939bp) protein (313aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Protease HtpX homolog n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GQJ5_9BIFI
htpX; endopeptidase HtpX
L2_021_000G1_scaffold_218_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12897..14348)
DNA (1452bp) protein (484aa)
Pyridine nucleotide-disulfide oxidoreductase n=3 Tax=Bifidobacterium RepID=E4V795_BIFBI
Ferredoxin--NADP reductase {ECO:0000313|EMBL:EKE50320.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
fprA; ferredoxin--NADP reductase
L2_021_000G1_scaffold_218_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14519..16720)
DNA (2202bp) protein (734aa)
ziaA; zinc-transporting ATPase (EC:3.6.3.5)
Cation transport ATPase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HAB9_9BIFI
Cation transport ATPase {ECO:0000313|EMBL:CDB23157.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_218_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17099..19003)
DNA (1905bp) protein (635aa)
Trypsin-like serine protease n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELG8_BIFBS
degP; Trypsin-like serine protease
Trypsin-like serine protease {ECO:0000313|EMBL:ADO52363.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_218_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19372..20673
DNA (1302bp) protein (434aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; Queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Queuine tRNA-ribosyltransferase n=4 Tax=Bifidobacterium bifidum RepID=E4NYG1_BIFBP
L2_021_000G1_scaffold_218_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21310..21786)
DNA (477bp) protein (159aa)
Acetyltransferase family protein n=2 Tax=Bifidobacterium bifidum RepID=E4NYG0_BIFBP
acetyltransferase family protein
Acetyltransferase family protein {ECO:0000313|EMBL:KFI42235.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_000G1_scaffold_218_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21804..22622)
DNA (819bp) protein (273aa)
hydrolase (EC:4.2.99.20)
Hydrolase, alpha/beta fold family n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYF9_BIFBP
Hydrolase {ECO:0000313|EMBL:EKF14911.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_218_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22744..23076)
DNA (333bp) protein (111aa)
UPF0145 protein BBIF_0154 n=5 Tax=Bifidobacterium RepID=E3ELG4_BIFBS
hypothetical protein
UPF0145 protein BBNG_00041 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_000G1_scaffold_218_19
unknown

Not on your lists

comp(23073..23276)
DNA (204bp) protein (68aa)

This feature has no annotations

L2_021_000G1_scaffold_218_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23428..23826
DNA (399bp) protein (133aa)
DivIVA domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VAQ5_BIFBI
hypothetical protein
DivIVA domain protein {ECO:0000313|EMBL:EFR49493.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_000G1_scaffold_218_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23977..24492
DNA (516bp) protein (172aa)
MutT/nudix family protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HX31_BIFBI
MutT/nudix family protein {ECO:0000313|EMBL:EKE51017.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
MutT/nudix family protein
L2_021_000G1_scaffold_218_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24489..27674
DNA (3186bp) protein (1062aa)
Putative ATP-dependent helicase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFN6_BIFBI
putative ATP-dependent helicase
Putative ATP-dependent helicase {ECO:0000313|EMBL:AFL03699.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_218_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28024..28524
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYF4_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF14907.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_218_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28529..29533)
DNA (1005bp) protein (335aa)
Bifunctional methionine sulfoxide reductase A/B protein n=3 Tax=Bifidobacterium bifidum RepID=E3ELF9_BIFBS
msrA; bifunctional methionine sulfoxide reductase A/B
Bifunctional methionine sulfoxide reductase A/B {ECO:0000313|EMBL:EKF14906.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_218_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29635..30162)
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VAQ0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49488.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_021_000G1_scaffold_218_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30214..30969)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LAD3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF14904.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_021_000G1_scaffold_218_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31233..32207)
DNA (975bp) protein (325aa)
Putative permease, EamA-like transporter family n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELF6_BIFBS
permease
Putative permease, EamA-like transporter family {ECO:0000313|EMBL:ADO52351.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_218_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32243..33292)
DNA (1050bp) protein (350aa)
PldB Lysophospholipase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I7Y6_BIFBI
PldB Lysophospholipase {ECO:0000313|EMBL:EKE51024.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pldB Lysophospholipase
L2_021_000G1_scaffold_218_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33458..35785)
DNA (2328bp) protein (776aa)
Presumable ABC-2 type transporter n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELF4_BIFBS
ABC transporter
Presumable ABC-2 type transporter {ECO:0000313|EMBL:ADO52349.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_218_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35782..38604)
DNA (2823bp) protein (941aa)
Phage infection protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFM8_BIFBI
Phage infection protein {ECO:0000313|EMBL:AFL03691.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
pip; phage infection protein
Displaying items 1-30 of 51 in total

View Taxonomy