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L2_021_000G1_scaffold_219

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_219_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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119..1945
DNA (1827bp) protein (609aa)
Alpha-amylase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6ASC2_9FIRM
Alpha-amylase {ECO:0000313|EMBL:CDA54903.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glycosidases
L2_021_000G1_scaffold_219_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2447..3778
DNA (1332bp) protein (444aa)
aspartyl-tRNA synthetase, archaeal type (EC:6.1.1.23)
Aspartate--tRNA ligase n=2 Tax=Roseburia RepID=C7GFQ3_9FIRM
Aspartate--tRNA ligase {ECO:0000313|EMBL:CDA54902.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_219_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3850..4764
DNA (915bp) protein (305aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV46_9FIRM
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000313|EMBL:CDA54900.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
glutamyl-tRNA(Gln) amidotransferase subunit C
L2_021_000G1_scaffold_219_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4833..6302
DNA (1470bp) protein (490aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.- 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120, ECO:0000313|EMBL:CBL14119.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3C9_9FIRM
L2_021_000G1_scaffold_219_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6324..7754
DNA (1431bp) protein (477aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Roseburia intestinalis RepID=D4L3D0_9FIRM
L2_021_000G1_scaffold_219_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8105..8620
DNA (516bp) protein (172aa)
Predicted HD superfamily hydrolase n=2 Tax=Roseburia intestinalis RepID=D4KSB0_9FIRM
Predicted HD superfamily hydrolase
Predicted HD superfamily hydrolase {ECO:0000313|EMBL:CBL09762.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_021_000G1_scaffold_219_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8709..10637)
DNA (1929bp) protein (643aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSA9_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL09761.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type multidrug transport system, ATPase and permease components
L2_021_000G1_scaffold_219_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10637..12319)
DNA (1683bp) protein (561aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSA8_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL09760.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type multidrug transport system, ATPase and permease components
L2_021_000G1_scaffold_219_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12509..13009
DNA (501bp) protein (167aa)
Transcriptional regulators n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSA7_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL09759.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_021_000G1_scaffold_219_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13263..15452
DNA (2190bp) protein (730aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CBL09758.1}; EC=1.17.4.2 {ECO:0000313|EMBL:CBL09758.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Anaerobic ribonucleoside-triphosphate reductase n=2 Tax=Roseburia intestinalis RepID=D4KSA6_9FIRM
L2_021_000G1_scaffold_219_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15564..15953
DNA (390bp) protein (130aa)
Thioesterase superfamily n=4 Tax=Roseburia RepID=D4KSA5_9FIRM
Thioesterase superfamily
Thioesterase superfamily {ECO:0000313|EMBL:CDA57312.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_219_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15963..16739
DNA (777bp) protein (259aa)
Predicted divalent heavy-metal cations transporter n=3 Tax=Roseburia RepID=D4L3D7_9FIRM
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:CDA57311.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted divalent heavy-metal cations transporter
L2_021_000G1_scaffold_219_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16754..17104
DNA (351bp) protein (117aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GFP1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57310.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_219_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17116..17886
DNA (771bp) protein (257aa)
Uncharacterized conserved protein n=4 Tax=Roseburia RepID=D4KSA3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CDA57309.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_219_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17950..18600
DNA (651bp) protein (217aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GFN9_9FIRM
RNAse H family protein {ECO:0000313|EMBL:CDA57308.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNAse H family protein
L2_021_000G1_scaffold_219_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18624..19727
DNA (1104bp) protein (368aa)
Transcriptional regulator, GntR family n=5 Tax=Roseburia RepID=D4KSA1_9FIRM
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CBL14131.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_219_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19731..20249
DNA (519bp) protein (173aa)
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Roseburia intestinalis RepID=D4KSA0_9FIRM
L2_021_000G1_scaffold_219_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20360..20608
DNA (249bp) protein (83aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B2D1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57305.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_219_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20638..21711
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3E4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14134.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_219_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21776..21907)
DNA (132bp) protein (44aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GGN5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57303.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_219_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22188..22943
DNA (756bp) protein (252aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3E6_9FIRM
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CBL14136.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_219_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22977..24473
DNA (1497bp) protein (499aa)
Putative RNA methylase family UPF0020 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS95_9FIRM
Putative RNA methylase family UPF0020.
Putative RNA methylase family UPF0020 {ECO:0000313|EMBL:CBL09747.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_021_000G1_scaffold_219_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24480..27131
DNA (2652bp) protein (884aa)
Diguanylate cyclase (GGDEF) domain n=3 Tax=Roseburia RepID=D4KS94_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL14138.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
diguanylate cyclase (GGDEF) domain
L2_021_000G1_scaffold_219_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27612..28706
DNA (1095bp) protein (365aa)
RelA/SpoT domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN0_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:EEU99025.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Guanosine polyphosphate pyrophosphohydrolases/synthetases
L2_021_000G1_scaffold_219_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28824..29837
DNA (1014bp) protein (338aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=2 Tax=Roseburia RepID=R6BE40_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_021_000G1_scaffold_219_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30076..31908
DNA (1833bp) protein (611aa)
DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA primase n=3 Tax=Roseburia RepID=D4L3F0_9FIRM
L2_021_000G1_scaffold_219_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31946..33139
DNA (1194bp) protein (398aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3F1_9FIRM
RNA polymerase, sigma 70 subunit, RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_219_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33141..33899
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99020.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted SAM-dependent methyltransferase
L2_021_000G1_scaffold_219_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33986..35671
DNA (1686bp) protein (562aa)
Uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000313|EMBL:CBL14143.1}; EC=2.7.1.48 {ECO:0000313|EMBL:CBL14143.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Uridine kinase n=2 Tax=Roseburia RepID=D4L3F3_9FIRM
L2_021_000G1_scaffold_219_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36414..36821
DNA (408bp) protein (136aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GGM1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14145.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 57 in total

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