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L2_021_000G1_scaffold_240

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_240_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

254..802
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CG61_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83540.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_000G1_scaffold_240_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

812..1429
DNA (618bp) protein (206aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4V7I1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_240_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1853..2863
DNA (1011bp) protein (337aa)
cysK; cysteine synthase CysK (EC:4.2.1.22)
Cystathionine beta-synthase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6G9V2_9BIFI
Cystathionine beta-synthase {ECO:0000313|EMBL:CDB22223.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_240_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2965..4152
DNA (1188bp) protein (396aa)
Cystathionine gamma-synthase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP89_BIFBS
metB; cystathionine gamma-synthase
Cystathionine gamma-synthase {ECO:0000313|EMBL:ADO53506.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_240_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4327..6339
DNA (2013bp) protein (671aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP88_BIFBS
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ADO53505.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
recQ; ATP-dependent DNA helicase RecQ
L2_021_000G1_scaffold_240_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6508..6993
DNA (486bp) protein (162aa)
luxS; autoinducer-2 production protein (EC:4.4.1.21)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
S-ribosylhomocysteine lyase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXZ3_BIFBP
L2_021_000G1_scaffold_240_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7227..7712
DNA (486bp) protein (162aa)
CysE Serine O-acetyltransferase n=8 Tax=Bifidobacterium RepID=E4NXZ2_BIFBP
cysE; serine O-acetyltransferase
CysE Serine O-acetyltransferase {ECO:0000313|EMBL:CDB22218.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_240_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7882..9309)
DNA (1428bp) protein (476aa)
Amino acid transporter n=6 Tax=Bifidobacterium RepID=E3EP84_BIFBS
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AFL04911.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_240_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9544..10902
DNA (1359bp) protein (453aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Alanine racemase n=3 Tax=Bifidobacterium bifidum RepID=E4NXZ0_BIFBP
L2_021_000G1_scaffold_240_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11017..12297
DNA (1281bp) protein (427aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase (EC:3.1.5.1)
Dgt Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXY9_BIFBP
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000313|EMBL:EKF16248.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_240_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12352..14442
DNA (2091bp) protein (697aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
DNA primase n=7 Tax=Bifidobacterium bifidum RepID=E3EP81_BIFBS
dnaG; DNA primase
L2_021_000G1_scaffold_240_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14786..15655)
DNA (870bp) protein (290aa)
HexR repressor n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP80_BIFBS
HexR repressor
HexR repressor {ECO:0000313|EMBL:ADO53497.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_240_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15786..17066)
DNA (1281bp) protein (427aa)
Putative transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WJ43_BIFBI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL04906.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_000G1_scaffold_240_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17407..17697
DNA (291bp) protein (97aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=E4V7G9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22211.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_240_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18046..20010)
DNA (1965bp) protein (655aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bifidobacterium bifidum RepID=E3EP77_BIFBS
L2_021_000G1_scaffold_240_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20266..21255
DNA (990bp) protein (330aa)
Alcohol dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP76_BIFBS
adh2; alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:ADO53493.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_240_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21299..21796
DNA (498bp) protein (166aa)
purE; phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit PurE (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=7 Tax=Bifidobacterium RepID=E3EP75_BIFBS
L2_021_000G1_scaffold_240_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21780..22949
DNA (1170bp) protein (390aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit n=4 Tax=Bifidobacterium RepID=E3EP74_BIFBS
purK; phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
L2_021_000G1_scaffold_240_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23101..23496
DNA (396bp) protein (132aa)
Ferric uptake regulator, Fur family n=4 Tax=Bifidobacterium bifidum RepID=E3EP73_BIFBS
ferric uptake regulator, Fur family
Ferric uptake regulation protein {ECO:0000313|EMBL:KFI43344.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_000G1_scaffold_240_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23654..23923)
DNA (270bp) protein (90aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WJ36_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83573.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_000G1_scaffold_240_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23920..24720)
DNA (801bp) protein (267aa)
TIGR03943 family protein n=5 Tax=Bifidobacterium RepID=E4VAY2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15407.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_240_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24725..25846)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVC6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51488.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_021_000G1_scaffold_240_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26055..26225)
DNA (171bp) protein (57aa)
50S ribosomal protein L32 n=2 Tax=Bifidobacterium bifidum RepID=E3EP69_BIFBS
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_000G1_scaffold_240_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26225..26347)
DNA (123bp) protein (41aa)
50S ribosomal protein L36 n=8 Tax=Bifidobacterium RepID=E3EP68_BIFBS
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_240_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26525..26782)
DNA (258bp) protein (86aa)
50S ribosomal protein L31 type B n=4 Tax=Bifidobacterium RepID=I3WJ31_BIFBI
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_000G1_scaffold_240_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26843..27148)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=7 Tax=Bifidobacterium RepID=E4NXX3_BIFBP
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_000G1_scaffold_240_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(27225..27521)
DNA (297bp) protein (99aa)
50S ribosomal protein L28 n=3 Tax=Bifidobacterium RepID=K2M062_BIFBI
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
rpmB2; 50S ribosomal protein L28
L2_021_000G1_scaffold_240_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27571..28338
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=K2M2T5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15400.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_021_000G1_scaffold_240_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28459..29367
DNA (909bp) protein (303aa)
Metal ABC transporter substrate-binding protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LBY3_BIFBI
Metal ABC transporter substrate-binding protein {ECO:0000313|EMBL:EKF15399.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
metal ABC transporter substrate-binding protein
L2_021_000G1_scaffold_240_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30040..32658)
DNA (2619bp) protein (873aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAX3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50723.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
Displaying items 1-30 of 49 in total

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