ggKbase home page

L2_021_000G1_scaffold_255

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_255_1
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(75..2840)
DNA (2766bp) protein (922aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EET15059.2}; EC=2.7.9.1 {ECO:0000313|EMBL:EET15059.2};; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=2 Tax=Bacteroides RepID=C6Z2F0_9BACE
L2_021_000G1_scaffold_255_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2994..4415
DNA (1422bp) protein (474aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteroides RepID=I9IMZ6_BACVU
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EOS01716.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
RNA methyltransferase
L2_021_000G1_scaffold_255_3
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4460..5386
DNA (927bp) protein (309aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
RluA family pseudouridine synthase n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCH0_BACVU
RNA pseudouridylate synthase
L2_021_000G1_scaffold_255_4
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5866..6036)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Bacteroides dorei DSM 17855 RepID=B6W1W2_9BACE
Putative uncharacterized protein {ECO:0000313|EMBL:EEB24039.1}; TaxID=483217 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei DSM 17855.;"
L2_021_000G1_scaffold_255_5
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6594..8699)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCF2_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EOS01718.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
prolyl oligopeptidase
L2_021_000G1_scaffold_255_6
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8764..8997
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCV9_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EOS01719.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L2_021_000G1_scaffold_255_7
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8927..10792)
DNA (1866bp) protein (622aa)
Membrane protein insertase YidC n=7 Tax=root RepID=YIDC_BACV8
inner membrane protein translocase component YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
L2_021_000G1_scaffold_255_8
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10832..12430)
DNA (1599bp) protein (533aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
CTP synthase n=7 Tax=Bacteroides RepID=A6L5L5_BACV8
L2_021_000G1_scaffold_255_9
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12658..14034
DNA (1377bp) protein (459aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=I8ZH55_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EIY74830.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
hypothetical protein
L2_021_000G1_scaffold_255_10
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14134..15222)
DNA (1089bp) protein (363aa)
UDP-N-acetylglucosamine 2-epimerase n=2 Tax=Bacteroides vulgatus RepID=I9IMY7_BACVU
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EIY74829.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
UDP-N-acetylglucosamine 2-epimerase
L2_021_000G1_scaffold_255_11
Bacteroides sp. 9_1_42FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15306..15920
DNA (615bp) protein (205aa)
Uncharacterized protein n=16 Tax=Bacteroides RepID=A6L5L2_BACV8
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EEO61691.1}; TaxID=457395 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 9_1_42FAA.;"
L2_021_000G1_scaffold_255_12

Not on your lists

16079..16582
DNA (504bp) protein (168aa)
Sigma-70 region 2 n=14 Tax=root RepID=C3Q293_9BACE
RNA polymerase sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EKC50010.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_021_000G1_scaffold_255_13
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16772..18547
DNA (1776bp) protein (592aa)
Pyruvate carboxylase subunit B n=5 Tax=Bacteroides RepID=A6L5K8_BACV8
pyruvate carboxylase subunit B
HMGL-like protein {ECO:0000313|EMBL:CDF17878.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L2_021_000G1_scaffold_255_14
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18673..19551
DNA (879bp) protein (293aa)
Xylanase n=6 Tax=Bacteroides RepID=E5URK9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KDS47771.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
xylanase
L2_021_000G1_scaffold_255_15
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19529..20245)
DNA (717bp) protein (239aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCG1_BACVU
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
L2_021_000G1_scaffold_255_16
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20374..21093)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCW6_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EOS01729.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
membrane protein
L2_021_000G1_scaffold_255_17
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21142..22485)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A6L5K4_BACV8
hypothetical protein
MATE efflux family protein {ECO:0000313|EMBL:EIY74822.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L2_021_000G1_scaffold_255_18
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22684..23964)
DNA (1281bp) protein (427aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
Serine hydroxymethyltransferase n=7 Tax=Bacteroides RepID=GLYA_BACV8
L2_021_000G1_scaffold_255_19
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24211..24930)
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=I8ZH45_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EIY74820.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
hypothetical protein
L2_021_000G1_scaffold_255_20
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24940..25527)
DNA (588bp) protein (196aa)
Flavoredoxin n=6 Tax=Bacteroides RepID=A6L5K1_BACV8
flavoredoxin
Flavin reductase like domain protein {ECO:0000313|EMBL:KDS31279.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L2_021_000G1_scaffold_255_21
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25533..26000)
DNA (468bp) protein (156aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain n=7 Tax=Bacteroides RepID=PYRI_BACV8
Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L2_021_000G1_scaffold_255_22
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26009..26950)
DNA (942bp) protein (314aa)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
Aspartate carbamoyltransferase n=6 Tax=Bacteroides RepID=PYRB_BACV8
L2_021_000G1_scaffold_255_23
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27111..29438
DNA (2328bp) protein (776aa)
Glycosyltransferase family 51, candidate bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase n=6 Tax=Bacteroides RepID=A6L5J8_BACV8
glycosyl transferase family protein
Penicillin-binding protein 1A {ECO:0000313|EMBL:EOS01736.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L2_021_000G1_scaffold_255_24
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29644..30471
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCI7_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EOS01737.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
hypothetical protein
L2_021_000G1_scaffold_255_25
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30546..31469)
DNA (924bp) protein (308aa)
Transcriptional regulator n=3 Tax=Bacteroides vulgatus RepID=A6L5J6_BACV8
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EOS01738.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L2_021_000G1_scaffold_255_26
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31621..32277)
DNA (657bp) protein (219aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
translaldolase (EC:2.2.1.2)
Probable transaldolase n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCX6_BACVU
L2_021_000G1_scaffold_255_27
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32374..33348)
DNA (975bp) protein (325aa)
Antibiotic transport system permease n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HKR0_BACVU
Antibiotic transport system permease {ECO:0000313|EMBL:EOS01740.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
ABC transporter permease
L2_021_000G1_scaffold_255_28
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33345..33542)
DNA (198bp) protein (66aa)
Conserved domain protein n=2 Tax=Bacteroides vulgatus RepID=D4V7H5_BACVU
outer membrane efflux protein
Putative outer membrane efflux protein {ECO:0000313|EMBL:KDS31211.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L2_021_000G1_scaffold_255_29
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34289..34663)
DNA (375bp) protein (125aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=7 Tax=Bacteroides RepID=A6L5J1_BACV8
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EIY74806.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L2_021_000G1_scaffold_255_30
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34742..35500
DNA (759bp) protein (253aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
3-deoxy-manno-octulosonate cytidylyltransferase n=7 Tax=Bacteroides RepID=KDSB_BACV8
Displaying items 1-30 of 52 in total

View Taxonomy