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L2_021_000G1_scaffold_300

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_300_1
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..2095)
DNA (2094bp) protein (698aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QMV9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY29276.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
dual specificity phosphatase, catalytic domain protein
L2_021_000G1_scaffold_300_2
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2608..3621
DNA (1014bp) protein (338aa)
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G425_CLOPA
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:ETD70703.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
3-deoxy-7-phosphoheptulonate synthase
L2_021_000G1_scaffold_300_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3877..4929
DNA (1053bp) protein (351aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
3-dehydroquinate synthase n=1 Tax=Clostridium beijerinckii RepID=UPI0003014F79
aroB; 3-dehydroquinate synthase
L2_021_000G1_scaffold_300_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5107..6411
DNA (1305bp) protein (435aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUX9_9CLOT
L2_021_000G1_scaffold_300_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6389..7462
DNA (1074bp) protein (358aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
chorismate synthase n=1 Tax=Clostridium beijerinckii RepID=UPI000309BBD1
chorismate synthase
L2_021_000G1_scaffold_300_6
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7478..8623
DNA (1146bp) protein (382aa)
Chorismate mutase {ECO:0000313|EMBL:ABR36682.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ABR36682.1};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Chorismate mutase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M252_CLOB8
chorismate mutase
L2_021_000G1_scaffold_300_7
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9059..9868
DNA (810bp) protein (270aa)
aroE1; shikimate dehydrogenase AroE (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Shikimate dehydrogenase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MME4_CLOSA
L2_021_000G1_scaffold_300_8

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10147..10656
DNA (510bp) protein (170aa)
aroK; shikimate kinase AroK (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLL2_CLOSA
Shikimate kinase {ECO:0000313|EMBL:ETJ35870.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_021_000G1_scaffold_300_9
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10836..11270
DNA (435bp) protein (145aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
3-dehydroquinate dehydratase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUY4_9CLOT
3-dehydroquinate dehydratase
L2_021_000G1_scaffold_300_10
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11495..12508
DNA (1014bp) protein (338aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U4Q5_9CLOT
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:EKQ56471.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
3-deoxy-7-phosphoheptulonate synthase
L2_021_000G1_scaffold_300_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12680..13513
DNA (834bp) protein (278aa)
Prephenate dehydrogenase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M247_CLOB8
prephenate dehydrogenase
Prephenate dehydrogenase {ECO:0000313|EMBL:ABR36677.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_021_000G1_scaffold_300_12
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13675..14388
DNA (714bp) protein (238aa)
GntR family transcriptional regulator n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G4S6_CLOPA
GntR family transcriptional regulator {ECO:0000313|EMBL:ETD70687.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
GntR family transcriptional regulator
L2_021_000G1_scaffold_300_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14647..15540)
DNA (894bp) protein (298aa)
AraC family transcriptional regulator n=1 Tax=Clostridium termitidis CT1112 RepID=S0FST1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KHD13434.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
AraC family transcriptional regulator
L2_021_000G1_scaffold_300_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15764..18073
DNA (2310bp) protein (770aa)
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Bacillus subtilis subsp. spizizenii (strain TU-B-10) RepID=G4P1L4_BACPT
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KHD13435.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
acetyl-CoA carboxylase, biotin carboxylase
L2_021_000G1_scaffold_300_15
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18245..19975
DNA (1731bp) protein (577aa)
Two component AraC family transcriptional regulator protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FWU2_9CLOT
Two component AraC family transcriptional regulator protein {ECO:0000313|EMBL:EMS73634.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
two component AraC family transcriptional regulator
L2_021_000G1_scaffold_300_16
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19972..21813
DNA (1842bp) protein (614aa)
Histidine kinase,HAMP domain-containing protein {ECO:0000313|EMBL:EMS73001.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EMS73001.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Histidine kinase,HAMP domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FRM4_9CLOT
histidine kinase
L2_021_000G1_scaffold_300_17
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21892..23265
DNA (1374bp) protein (458aa)
ABC transporter substrate-binding protein n=1 Tax=Paenibacillus sp. A9 RepID=UPI00037CC944
extracellular solute-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ADO58382.1}; TaxID=886882 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa).;"
L2_021_000G1_scaffold_300_18
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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23325..24281
DNA (957bp) protein (319aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Paenibacillus sp. A9 RepID=UPI00036FA496
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CQR57307.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
L2_021_000G1_scaffold_300_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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24281..25114
DNA (834bp) protein (278aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KEH5_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN36540.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
binding-protein-dependent transport systems inner membrane component
L2_021_000G1_scaffold_300_20
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25514..26902
DNA (1389bp) protein (463aa)
membrane protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002EE8BB1
Transporter protein {ECO:0000313|EMBL:AJG98666.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L2_021_000G1_scaffold_300_21
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27030..27587)
DNA (558bp) protein (186aa)
Adenylate cyclase, class 2 (Thermophilic) n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TV13_9CLOT
Adenylate cyclase, class 2 (Thermophilic) {ECO:0000313|EMBL:EKQ56510.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
adenylate cyclase
L2_021_000G1_scaffold_300_22
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27967..29004
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N6G9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF59007.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_021_000G1_scaffold_300_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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29235..30128
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RN65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75683.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
D-3-phosphoglycerate dehydrogenase
L2_021_000G1_scaffold_300_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30249..31220
DNA (972bp) protein (324aa)
Oxidoreductase, aldo/keto reductase family n=2 Tax=Clostridium butyricum RepID=B1R295_CLOBU
L-glyceraldehyde 3-phosphate reductase {ECO:0000313|EMBL:KHD16213.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
Putative ion-channel protein
L2_021_000G1_scaffold_300_25
unknown

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comp(31465..31731)
DNA (267bp) protein (89aa)

This feature has no annotations

L2_021_000G1_scaffold_300_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32167..33087)
DNA (921bp) protein (307aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
argF; ornithine carbamoyltransferase ArgF (EC:2.1.3.3)
UPI0003D67ED5 related cluster n=1 Tax=unknown RepID=UPI0003D67ED5
L2_021_000G1_scaffold_300_27
unknown

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comp(33243..33503)
DNA (261bp) protein (87aa)

This feature has no annotations

L2_021_000G1_scaffold_300_28
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33575..34753)
DNA (1179bp) protein (393aa)
argD; acetylornithine aminotransferase ArgD (EC:2.6.1.11)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Acetylornithine aminotransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMH2_CLOSA
L2_021_000G1_scaffold_300_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34946..35842)
DNA (897bp) protein (299aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
acetylglutamate kinase n=1 Tax=Clostridium beijerinckii RepID=UPI000375ECF8
acetylglutamate kinase
L2_021_000G1_scaffold_300_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35930..37153)
DNA (1224bp) protein (408aa)
argJ; argJ1: arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMA4_CLOSA
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying items 1-30 of 87 in total

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