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L2_021_000G1_scaffold_384

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_384_1
unknown

Not on your lists

423..695
DNA (273bp) protein (91aa)

This feature has no annotations

L2_021_000G1_scaffold_384_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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697..1518
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76817.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_384_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1541..2347
DNA (807bp) protein (269aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF8_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EFB76816.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_384_4
unknown

Not on your lists

2384..2659
DNA (276bp) protein (92aa)

This feature has no annotations

L2_021_000G1_scaffold_384_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2643..3350
DNA (708bp) protein (236aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF7_9FIRM
L2_021_000G1_scaffold_384_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3421..3975
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF6_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome recycling factor
L2_021_000G1_scaffold_384_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4081..4941
DNA (861bp) protein (287aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF5_9FIRM
L2_021_000G1_scaffold_384_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4954..6105
DNA (1152bp) protein (384aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF4_9FIRM
L2_021_000G1_scaffold_384_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6240..7346
DNA (1107bp) protein (369aa)
RIP metalloprotease RseP {ECO:0000313|EMBL:EFB76811.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFB76811.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RIP metalloprotease RseP n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF3_9FIRM
RIP metalloprotease RseP
L2_021_000G1_scaffold_384_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7358..8410
DNA (1053bp) protein (351aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLF2_9FIRM
L2_021_000G1_scaffold_384_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8656..12963
DNA (4308bp) protein (1436aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase III catalytic subunit, PolC type (EC:2.7.7.7)
DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE9_9FIRM
L2_021_000G1_scaffold_384_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13320..13652
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76767.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_021_000G1_scaffold_384_13
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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13737..14078
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IKT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40929.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L2_021_000G1_scaffold_384_14
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14099..14953
DNA (855bp) protein (285aa)
Predicted membrane protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U9T6_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ65737.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L2_021_000G1_scaffold_384_15
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15069..15776
DNA (708bp) protein (236aa)
Response regulator of the LytR/AlgR family n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QC95_9FIRM
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDC30694.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Response regulator of the LytR/AlgR family
L2_021_000G1_scaffold_384_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15777..17057
DNA (1281bp) protein (427aa)
Sensor histidine kinase VirS domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIM9_9FIRM
Sensor histidine kinase VirS domain protein {ECO:0000313|EMBL:EFB77388.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two-component sensor kinase
L2_021_000G1_scaffold_384_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17230..19149
DNA (1920bp) protein (640aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIN0_9FIRM
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EFB77389.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_384_18
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19332..22331
DNA (3000bp) protein (1000aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FT39_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EEG94268.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
beta-glucosidase
L2_021_000G1_scaffold_384_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22417..23979
DNA (1563bp) protein (521aa)
Uncharacterized protein (Fragment) n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJ93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ06765.1}; Flags: Fragment;; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Na+/melibiose symporter and related transporters
L2_021_000G1_scaffold_384_20
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24282..25358)
DNA (1077bp) protein (359aa)
Putative integrase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KSI7_9FIRM
Putative integrase {ECO:0000313|EMBL:CDE78751.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
putative integrase
L2_021_000G1_scaffold_384_21
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(25497..25973)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YA46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30790.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
xre family toxin-antitoxin system, antitoxin component
L2_021_000G1_scaffold_384_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26039..26335
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CRV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41120.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L2_021_000G1_scaffold_384_23
unknown

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26339..26557
DNA (219bp) protein (73aa)

This feature has no annotations

L2_021_000G1_scaffold_384_24
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26554..28095
DNA (1542bp) protein (514aa)
Phage/plasmid primase, P4 family domain-containing protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IFZ2_9FIRM
Phage/plasmid primase, P4 family domain-containing protein {ECO:0000313|EMBL:EOS20678.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
phage/plasmid primase, P4 family
L2_021_000G1_scaffold_384_25
unknown

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28261..28560
DNA (300bp) protein (100aa)

This feature has no annotations

L2_021_000G1_scaffold_384_26
unknown

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28736..28924
DNA (189bp) protein (63aa)

This feature has no annotations

L2_021_000G1_scaffold_384_27
unknown

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28972..29151
DNA (180bp) protein (60aa)

This feature has no annotations

L2_021_000G1_scaffold_384_28
unknown

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29144..29341
DNA (198bp) protein (66aa)

This feature has no annotations

L2_021_000G1_scaffold_384_29
unknown

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29331..29450
DNA (120bp) protein (40aa)

This feature has no annotations

L2_021_000G1_scaffold_384_30
unknown

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29506..29646
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying items 1-30 of 46 in total

View Taxonomy