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L2_021_000G1_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_419_1
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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26..220
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=3 Tax=Bifidobacterium RepID=B6XTB6_9BIFI
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
L2_021_000G1_scaffold_419_2
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


271..654
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=3 Tax=Bifidobacterium RepID=B6XTB7_9BIFI
50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_021_000G1_scaffold_419_3
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

805..1758
DNA (954bp) protein (318aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTB8_9BIFI
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
recombinase XerC
L2_021_000G1_scaffold_419_4
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1933..2685
DNA (753bp) protein (251aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTB9_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ14876.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_021_000G1_scaffold_419_5
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3090..3869
DNA (780bp) protein (260aa)
Hydrolase {ECO:0000313|EMBL:KFI70694.1}; EC=3.6.1.13 {ECO:0000313|EMBL:KFI70694.1};; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
phosphohydrolase (EC:3.6.1.13)
Hydrolase, NUDIX family n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEB0_9BIFI
L2_021_000G1_scaffold_419_6
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3967..5247
DNA (1281bp) protein (427aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
Quinolinate synthase A n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEB2_9BIFI
quinolinate synthetase
L2_021_000G1_scaffold_419_7
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5244..6953
DNA (1710bp) protein (570aa)
L-aspartate oxidase {ECO:0000313|EMBL:KFI70696.1}; EC=1.4.3.16 {ECO:0000313|EMBL:KFI70696.1};; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
Putative L-aspartate oxidase n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEB3_9BIFI
L-aspartate oxidase
L2_021_000G1_scaffold_419_8
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6947..7834
DNA (888bp) protein (296aa)
Nicotinate-nucleotide pyrophosphorylase NadC {ECO:0000313|EMBL:KFI70697.1}; EC=2.4.2.19 {ECO:0000313|EMBL:KFI70697.1};; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEB4_9BIFI
nicotinate-nucleotide pyrophosphorylase
L2_021_000G1_scaffold_419_9
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7831..9120
DNA (1290bp) protein (430aa)
Cysteine desulfurase {ECO:0000313|EMBL:KFI70698.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KFI70698.1};; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
Aminotransferase, class V n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEB5_9BIFI
cysteine desulfurase
L2_021_000G1_scaffold_419_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9208..11139
DNA (1932bp) protein (644aa)
GTP-binding protein TypA n=2 Tax=Bifidobacterium RepID=C0BS64_9BIFI
GTP-binding protein {ECO:0000313|EMBL:BAR03916.1}; GTP-binding protein TypA {ECO:0000313|EMBL:EEG71014.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
GTP-binding protein TypA
L2_021_000G1_scaffold_419_11
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11343..11909
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTC6_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB21532.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
alcohol dehydrogenase
L2_021_000G1_scaffold_419_12
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11976..12956
DNA (981bp) protein (327aa)
Prephenate dehydratase {ECO:0000313|EMBL:EEB21533.1}; EC=4.2.1.51 {ECO:0000313|EMBL:EEB21533.1};; Putative chorismate mutase {ECO:0000313|EMBL:BAR02143.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Prephenate dehydratase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTC7_9BIFI
chorismate mutase
L2_021_000G1_scaffold_419_13
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12953..13990
DNA (1038bp) protein (346aa)
Prephenate dehydrogenase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTC8_9BIFI
Putative prephenate dehydrogenase {ECO:0000313|EMBL:BAR02142.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
prephenate dehydrogenase
L2_021_000G1_scaffold_419_14
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13995..14252)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BS60_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28200.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
hypothetical protein
L2_021_000G1_scaffold_419_15
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14431..15357
DNA (927bp) protein (309aa)
Tyrosine recombinase XerC n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTD0_9BIFI
recombinase XerC
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_021_000G1_scaffold_419_16
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15494..17143
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P2U0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15004.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
ABC transporter substrate-binding protein
L2_021_000G1_scaffold_419_17
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17370..19022
DNA (1653bp) protein (551aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BS57_9BIFI
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEF28203.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
oppA2; oligopeptide-binding protein OppA
L2_021_000G1_scaffold_419_18
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19324..20250
DNA (927bp) protein (309aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=C0BS56_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15001.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
oppB2; peptide ABC transporter permease
L2_021_000G1_scaffold_419_19
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20268..21233
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NUY4_9BIFI
Peptide ABC transporter permease {ECO:0000313|EMBL:KEF28205.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
dppC; peptide ABC transporter permease
L2_021_000G1_scaffold_419_20
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21254..23263
DNA (2010bp) protein (670aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6P2T2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14999.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
dipeptide transport ATP-binding protein
L2_021_000G1_scaffold_419_21
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23341..24201
DNA (861bp) protein (287aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6NS65_9BIFI
Exodeoxyribonuclease III {ECO:0000313|EMBL:KEF28207.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
exodeoxyribonuclease III
L2_021_000G1_scaffold_419_22
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24319..25149
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BS52_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR03904.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L2_021_000G1_scaffold_419_23
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25176..25922
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BS51_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG71001.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
zinc ABC transporter permease
L2_021_000G1_scaffold_419_24
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25922..27187
DNA (1266bp) protein (422aa)
TRAM domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTD8_9BIFI
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29491.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
RNA methyltransferase
L2_021_000G1_scaffold_419_25
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27190..27771
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BS49_9BIFI
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29490.1}; Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFI67263.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
sugar ABC transporter substrate-binding protein
L2_021_000G1_scaffold_419_26
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27926..30394
DNA (2469bp) protein (823aa)
E1-E2 ATPase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTE0_9BIFI
haloacid dehalogenase
Haloacid dehalogenase {ECO:0000313|EMBL:AIZ14855.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_021_000G1_scaffold_419_27
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30464..33166
DNA (2703bp) protein (901aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
acnA; aconitate hydratase (EC:4.2.1.3)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PZ57_9BIFI
L2_021_000G1_scaffold_419_28
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33255..34634)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTG1_9BIFI
Multidrug transporter MatE {ECO:0000313|EMBL:KEF28214.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Na+ driven multidrug efflux pump
L2_021_000G1_scaffold_419_29
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34752..35399)
DNA (648bp) protein (216aa)
lacA; galactoside O-acetyltransferase (EC:2.3.1.18)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTG2_9BIFI
Acetyltransferase {ECO:0000313|EMBL:BAR02127.1}; Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEB21549.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L2_021_000G1_scaffold_419_30
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35460..36644
DNA (1185bp) protein (395aa)
Transcriptional regulator, AraC family n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTG3_9BIFI
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29485.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
AraC family transcriptional regulator
Displaying items 1-30 of 39 in total

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