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L2_021_000G1_scaffold_421

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_421_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(95..295)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BLJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54292.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_021_000G1_scaffold_421_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(736..1008)
DNA (273bp) protein (91aa)
Regulator of competence-specific genes n=2 Tax=Roseburia RepID=D4KUH1_9FIRM
Regulator of competence-specific genes
Regulator of competence-specific genes {ECO:0000313|EMBL:CDA54291.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1012..1365)
DNA (354bp) protein (118aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6AZR1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54289.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1439..1975)
DNA (537bp) protein (179aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUH3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL11013.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2258..2794)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=4 Tax=Roseburia RepID=D4KNW6_9FIRM
LSU ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3085..4044)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Roseburia RepID=C7GCX5_9FIRM
DNA-directed RNA polymerase subunit alpha
L2_021_000G1_scaffold_421_7
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4082..4675)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4N2_ROSHA
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L2_021_000G1_scaffold_421_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4695..5087)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=4 Tax=Roseburia RepID=D4KNW4_9FIRM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5190..5558)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=4 Tax=Roseburia RepID=D4KUH7_9FIRM
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6177..6395)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=5 Tax=Roseburia RepID=D4KNW2_9FIRM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6414..6677)
DNA (264bp) protein (88aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GCY1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54278.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6712..7509)
DNA (798bp) protein (266aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CBL08562.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Methionine aminopeptidase n=2 Tax=Roseburia intestinalis RepID=D4KNW0_9FIRM
L2_021_000G1_scaffold_421_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7523..8167)
DNA (645bp) protein (215aa)
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Adenylate kinase n=3 Tax=Roseburia RepID=D4KNV9_9FIRM
L2_021_000G1_scaffold_421_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8375..9691)
DNA (1317bp) protein (439aa)
Protein translocase subunit SecY n=4 Tax=Roseburia RepID=D4KNV7_9FIRM
protein translocase subunit secY/sec61 alpha
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9691..10131)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=4 Tax=Roseburia RepID=D4KNV6_9FIRM
LSU ribosomal protein L15P
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10156..10341)
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=4 Tax=Roseburia RepID=D4KNV5_9FIRM
LSU ribosomal protein L30P
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10356..10865)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=3 Tax=Roseburia RepID=D4KNV4_9FIRM
SSU ribosomal protein S5P
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_021_000G1_scaffold_421_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10884..11252)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=4 Tax=Roseburia RepID=D4KNV3_9FIRM
LSU ribosomal protein L18P
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_19
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11271..11810)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5L7_ROSHA
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L2_021_000G1_scaffold_421_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12038..12439)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=4 Tax=Roseburia RepID=D4KNV2_9FIRM
Ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12500..12685)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=3 Tax=Roseburia RepID=D4KNV1_9FIRM
Ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_021_000G1_scaffold_421_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12701..13240)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=2 Tax=Roseburia RepID=C7GCZ3_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
rplE; 50S ribosomal protein L5
L2_021_000G1_scaffold_421_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13263..13574)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=3 Tax=Roseburia RepID=D4KNV0_9FIRM
LSU ribosomal protein L24P
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_021_000G1_scaffold_421_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13587..13955)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=3 Tax=Roseburia intestinalis RepID=D4KNU9_9FIRM
LSU ribosomal protein L14P
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_021_000G1_scaffold_421_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13974..14231)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GCZ6_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
30S ribosomal protein S17
L2_021_000G1_scaffold_421_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14258..14467)
DNA (210bp) protein (70aa)
50S ribosomal protein L29 n=3 Tax=Roseburia intestinalis RepID=D4KNU8_9FIRM
LSU ribosomal protein L29P
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14457..14894)
DNA (438bp) protein (146aa)
50S ribosomal protein L16 n=4 Tax=Roseburia RepID=D4KNU7_9FIRM
LSU ribosomal protein L16P
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14894..15550)
DNA (657bp) protein (219aa)
30S ribosomal protein S3 n=3 Tax=root RepID=D4KNU6_9FIRM
SSU ribosomal protein S3P
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_021_000G1_scaffold_421_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15562..15948)
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=3 Tax=Roseburia intestinalis RepID=D4KNU5_9FIRM
LSU ribosomal protein L22P
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_021_000G1_scaffold_421_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15973..16254)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=3 Tax=Roseburia intestinalis RepID=D4KNU4_9FIRM
SSU ribosomal protein S19P
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying items 1-30 of 57 in total

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