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L2_021_000G1_scaffold_443

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_443_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(200..919)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76420.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Integral membrane protein, interacts with FtsH
L2_021_000G1_scaffold_443_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1088..2059
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CA84_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34353.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Acetyl xylan esterase
L2_021_000G1_scaffold_443_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2056..2865
DNA (810bp) protein (270aa)
Acetyl xylan esterase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C6E0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54208.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Acetyl xylan esterase
L2_021_000G1_scaffold_443_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2874..3953
DNA (1080bp) protein (360aa)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EFB76421.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EFB76421.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX3_9FIRM
L2_021_000G1_scaffold_443_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4132..4695)
DNA (564bp) protein (188aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76422.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L2_021_000G1_scaffold_443_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4692..5384)
DNA (693bp) protein (231aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX5_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB76423.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L2_021_000G1_scaffold_443_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5524..6582)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76424.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L2_021_000G1_scaffold_443_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6693..7391
DNA (699bp) protein (233aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX7_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EFB76425.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L2_021_000G1_scaffold_443_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7410..8396
DNA (987bp) protein (329aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB76426.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB76426.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX8_9FIRM
Glycosyltransferases involved in cell wall biogenesis
L2_021_000G1_scaffold_443_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8393..8971
DNA (579bp) protein (193aa)
Flavin reductase-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX9_9FIRM
Flavin reductase-like protein {ECO:0000313|EMBL:EFB76427.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_021_000G1_scaffold_443_11
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9157..9357)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6D0X6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA78854.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L2_021_000G1_scaffold_443_12
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9359..10342)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9L1K2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS49637.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
inner-membrane translocator
L2_021_000G1_scaffold_443_13
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10357..11865)
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M312_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65350.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L2_021_000G1_scaffold_443_14
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11972..13045)
DNA (1074bp) protein (358aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. CAG:242 RepID=R6DLV1_9CLOT
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:CDA78857.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_021_000G1_scaffold_443_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13382..14353)
DNA (972bp) protein (324aa)
Sugar-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY2_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EFB76430.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_021_000G1_scaffold_443_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14337..16058)
DNA (1722bp) protein (574aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY3_9FIRM
histidine kinase internal region
L2_021_000G1_scaffold_443_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16055..17308)
DNA (1254bp) protein (418aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB76432.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two component AraC family transcriptional regulator
L2_021_000G1_scaffold_443_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17338..19749)
DNA (2412bp) protein (804aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76433.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_021_000G1_scaffold_443_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19889..21739)
DNA (1851bp) protein (617aa)
UvrABC system protein C n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG8_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Excinuclease ABC subunit C
L2_021_000G1_scaffold_443_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21806..22069)
DNA (264bp) protein (88aa)
Phosphocarrier, HPr family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG9_9FIRM
Phosphocarrier, HPr family {ECO:0000313|EMBL:EFB76435.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphotransferase System HPr (HPr) Family
L2_021_000G1_scaffold_443_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22319..23551)
DNA (1233bp) protein (411aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH0_9FIRM
tRNA (guanine-N1)-methyltransferase
L2_021_000G1_scaffold_443_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23556..24086)
DNA (531bp) protein (177aa)
Ribosome maturation factor RimM n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH1_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
16S rRNA processing protein RimM
L2_021_000G1_scaffold_443_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24294..24527)
DNA (234bp) protein (78aa)
UPF0109 protein SUBVAR_05357 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH2_9FIRM
UPF0109 protein SUBVAR_05357 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA-binding protein (KH domain)
L2_021_000G1_scaffold_443_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24558..24797)
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH3_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S16P
L2_021_000G1_scaffold_443_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24900..26258)
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH4_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
signal recognition particle subunit FFH/SRP54 (srp54)
L2_021_000G1_scaffold_443_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26248..26646)
DNA (399bp) protein (133aa)
Helix-turn-helix protein, YlxM/p13 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH5_9FIRM
UPF0122 protein SUBVAR_05360 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_021_000G1_scaffold_443_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26939..27832
DNA (894bp) protein (298aa)
cysteine synthase (EC:2.5.1.47)
Pyridoxal-phosphate dependent protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH6_9FIRM
Pyridoxal-phosphate dependent protein {ECO:0000313|EMBL:EFB76442.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_443_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27958..29328
DNA (1371bp) protein (457aa)
SH3 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN77_9FIRM
SH3 domain protein {ECO:0000313|EMBL:EFB76012.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_443_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29347..30705
DNA (1359bp) protein (453aa)
SH3 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN77_9FIRM
SH3 domain protein {ECO:0000313|EMBL:EFB76012.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_443_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30886..31707)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76777.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
Displaying items 1-30 of 45 in total

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