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L2_021_000G1_scaffold_1130

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_1130_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

257..508
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76100.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_021_000G1_scaffold_1130_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(784..2046)
DNA (1263bp) protein (421aa)
Aluminum resistance protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG6_9FIRM
Aluminum resistance protein {ECO:0000313|EMBL:EFB76101.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L2_021_000G1_scaffold_1130_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2043..2828)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76102.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_021_000G1_scaffold_1130_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3021..4418)
DNA (1398bp) protein (466aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG8_9FIRM
L2_021_000G1_scaffold_1130_5
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4522..5694)
DNA (1173bp) protein (391aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q298_9FIRM
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CDC29900.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L2_021_000G1_scaffold_1130_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6010..7281)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75611.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Hemolysins and related proteins containing CBS domains
L2_021_000G1_scaffold_1130_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7835..8176)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH1_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L17P
L2_021_000G1_scaffold_1130_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8220..9179)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH2_9FIRM
L2_021_000G1_scaffold_1130_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9255..9857)
DNA (603bp) protein (201aa)
30S ribosomal protein S4 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH3_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rpsD; 30S ribosomal protein S4
L2_021_000G1_scaffold_1130_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9878..10282)
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH4_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S11P
L2_021_000G1_scaffold_1130_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10297..10668)
DNA (372bp) protein (124aa)
30S ribosomal protein S13 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH5_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S13P
L2_021_000G1_scaffold_1130_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10782..10895)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH6_9FIRM
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L36P
L2_021_000G1_scaffold_1130_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10929..11165)
DNA (237bp) protein (79aa)
Translation initiation factor IF-1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH7_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
translation initiation factor IF-1
L2_021_000G1_scaffold_1130_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11192..11440)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76113.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_021_000G1_scaffold_1130_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11428..12201)
DNA (774bp) protein (258aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Methionine aminopeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH9_9FIRM
methionine aminopeptidase
L2_021_000G1_scaffold_1130_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12208..12840)
DNA (633bp) protein (211aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI0_9FIRM
L2_021_000G1_scaffold_1130_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12858..14162)
DNA (1305bp) protein (435aa)
Protein translocase subunit SecY n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI1_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase subunit SecY
L2_021_000G1_scaffold_1130_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14164..14601)
DNA (438bp) protein (146aa)
50S ribosomal protein L15 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI2_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L15P
L2_021_000G1_scaffold_1130_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14619..14798)
DNA (180bp) protein (60aa)
Ribosomal protein L30 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI3_9FIRM
50S ribosomal protein L30 {ECO:0000256|SAAS:SAAS00082687}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L30P
L2_021_000G1_scaffold_1130_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14812..15315)
DNA (504bp) protein (168aa)
30S ribosomal protein S5 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI4_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S5P
L2_021_000G1_scaffold_1130_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15332..15691)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI5_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L18P
L2_021_000G1_scaffold_1130_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15710..16258)
DNA (549bp) protein (183aa)
50S ribosomal protein L6 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI6_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L6P
L2_021_000G1_scaffold_1130_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16275..16673)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI7_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S8P
L2_021_000G1_scaffold_1130_24

Not on your lists


comp(16741..16926)
DNA (186bp) protein (62aa)
Ribosomal protein S14p/S29e n=2 Tax=organismal metagenomes RepID=K1T7L1_9ZZZZ
Ribosomal protein S14p/S29e {ECO:0000313|EMBL:EKC63499.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Ribosomal protein S14
L2_021_000G1_scaffold_1130_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16941..17480)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI9_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribosomal protein L5
L2_021_000G1_scaffold_1130_26

Not on your lists


comp(17495..17809)
DNA (315bp) protein (105aa)
Ribosomal protein L24 n=1 Tax=human gut metagenome RepID=K1SNS7_9ZZZZ
Ribosomal protein L24 {ECO:0000313|EMBL:EKC62292.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
LSU ribosomal protein L24P
L2_021_000G1_scaffold_1130_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17825..18193)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ1_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L14P
L2_021_000G1_scaffold_1130_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18227..18481)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ2_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S17P
L2_021_000G1_scaffold_1130_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18497..18694)
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ3_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L29P
L2_021_000G1_scaffold_1130_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18691..19131)
DNA (441bp) protein (147aa)
50S ribosomal protein L16 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ4_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L16P
Displaying items 1-30 of 38 in total

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