ggKbase home page

L2_021_000G1_scaffold_1377

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_1377_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..763
DNA (762bp) protein (254aa)
ABC transporter substrate binding component n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MX33_BIFL1
ABC transporter substrate-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EIJ27081.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L2_021_000G1_scaffold_1377_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1051..1977
DNA (927bp) protein (309aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=8 Tax=Bifidobacterium RepID=D6DAH1_BIFLN
sugar permease of abc transporter system
ABC transporter, permease protein {ECO:0000313|EMBL:EEQ54493.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L2_021_000G1_scaffold_1377_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1998..4643
DNA (2646bp) protein (882aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GSX4_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEI81653.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L2_021_000G1_scaffold_1377_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5371..8295
DNA (2925bp) protein (975aa)
F5/8 type C domain protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GSX6_BIFLN
F5/8 type C domain protein {ECO:0000313|EMBL:EEI81655.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
glycosyl hydrolase
L2_021_000G1_scaffold_1377_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8250..10406
DNA (2157bp) protein (719aa)
F5/8 type C domain protein {ECO:0000313|EMBL:CCK34181.1}; EC=3.2.1.35 {ECO:0000313|EMBL:CCK34181.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
F5/8 type C domain protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I131_BIFLN
glycosyl hydrolase
L2_021_000G1_scaffold_1377_6
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10606..14322
DNA (3717bp) protein (1239aa)
Probable extracellular protein possibly involved in xylan or arabinan degredation n=3 Tax=Bifidobacterium RepID=E4R0K8_BIFLM
Probable extracellular protein possibly involved in xylan or arabinan degradation {ECO:0000313|EMBL:CCY95267.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
extracellular protein
L2_021_000G1_scaffold_1377_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14453..15286
DNA (834bp) protein (278aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=Q8G753_BIFLO
pyridoxal phosphate enzyme, YggS family
Uncharacterized protein {ECO:0000313|EMBL:AAN24256.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_021_000G1_scaffold_1377_8
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15362..16375)
DNA (1014bp) protein (338aa)
Phosphoribosylpyrophosphate synthetase n=13 Tax=Bifidobacterium RepID=B3DU47_BIFLD
ribose-phosphate pyrophosphokinase
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CCY95269.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L2_021_000G1_scaffold_1377_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16497..16979)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GSY0_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEI81659.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L2_021_000G1_scaffold_1377_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17144..17434
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=26 Tax=Bifidobacterium RepID=RS6_BIFLO
rpsF; SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L2_021_000G1_scaffold_1377_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17491..18147
DNA (657bp) protein (219aa)
Single-stranded DNA-binding protein n=5 Tax=Bifidobacterium longum RepID=D6ZXS6_BIFLJ
single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L2_021_000G1_scaffold_1377_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18208..18456
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=21 Tax=Bifidobacterium RepID=RS18_BIFLO
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L2_021_000G1_scaffold_1377_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18476..18922
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=17 Tax=Bifidobacterium RepID=RL9_BIFLD
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L2_021_000G1_scaffold_1377_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19309..19569
DNA (261bp) protein (87aa)
PtsH n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R0J8_BIFLM
ptsH; ptsh
PTS galactitol transporter subunit IIC {ECO:0000313|EMBL:KHD94590.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L2_021_000G1_scaffold_1377_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19569..21248
DNA (1680bp) protein (560aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R0J7_BIFLM
ptsA; ptsa
L2_021_000G1_scaffold_1377_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21482..22216
DNA (735bp) protein (245aa)
GlpF2 n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R0J6_BIFLM
glpF2; glpf2
Glycerol uptake permease {ECO:0000313|EMBL:AIW43248.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L2_021_000G1_scaffold_1377_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22300..25008)
DNA (2709bp) protein (903aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EEI81668.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EEI81668.1};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Copper-exporting ATPase n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GSY9_BIFLN
copper-transporting ATPase
L2_021_000G1_scaffold_1377_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25120..25401
DNA (282bp) protein (94aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=B3DU37_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24245.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_021_000G1_scaffold_1377_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25444..26868
DNA (1425bp) protein (475aa)
Uncharacterized protein conserved in bacteria n=6 Tax=Bifidobacterium RepID=D6DAF5_BIFLN
hypothetical protein
RmuC domain protein {ECO:0000313|EMBL:EEI81670.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L2_021_000G1_scaffold_1377_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26865..27494
DNA (630bp) protein (210aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=C2GSZ2_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK71157.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L2_021_000G1_scaffold_1377_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27588..28436
DNA (849bp) protein (283aa)
rRNA methylase n=9 Tax=Bifidobacterium RepID=B3DU34_BIFLD
spoU3; spou3
RNA methyltransferase {ECO:0000313|EMBL:KEY23527.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L2_021_000G1_scaffold_1377_22
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28552..28902
DNA (351bp) protein (117aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MUZ2_9BIFI
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C
L2_021_000G1_scaffold_1377_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28906..30447
DNA (1542bp) protein (514aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.- 6.3.5.7 6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=14 Tax=Bifidobacterium RepID=GATA_BIFLD
L2_021_000G1_scaffold_1377_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30473..30847
DNA (375bp) protein (125aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Bifidobacterium breve RepID=S2ZJK0_BIFBR
glutamyl-tRNA amidotransferase
L2_021_000G1_scaffold_1377_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30880..31737
DNA (858bp) protein (286aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MX57_BIFL1
aspartyl/glutamyl-tRNA amidotransferase subunit B
L2_021_000G1_scaffold_1377_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32033..33097
DNA (1065bp) protein (355aa)
Acetyltransferases, including N-acetylases of ribosomal proteins n=15 Tax=Bifidobacterium longum RepID=D6DAF0_BIFLN
acetyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:KEY23523.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L2_021_000G1_scaffold_1377_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33108..33422
DNA (315bp) protein (105aa)
Uncharacterized protein n=24 Tax=Bifidobacterium RepID=B3DU29_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK71152.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L2_021_000G1_scaffold_1377_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33596..35449
DNA (1854bp) protein (618aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=B3DU28_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:ACD98647.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
hypothetical protein
L2_021_000G1_scaffold_1377_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35668..37281
DNA (1614bp) protein (538aa)
Protoporphyrinogen oxidase n=18 Tax=Bifidobacterium RepID=B3DU27_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:AIW43260.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
hypothetical protein
L2_021_000G1_scaffold_1377_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37487..39556
DNA (2070bp) protein (690aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Transcription termination factor Rho n=15 Tax=Bifidobacterium RepID=B3DU26_BIFLD
transcription termination factor Rho
Displaying items 1-30 of 56 in total

View Taxonomy