ggKbase home page

L2_021_000G1_scaffold_95_15

Organism: L2_021_000G1_public_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 20 / 38 MC: 19
Location: comp(17269..20793)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=321967 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei (strain ATCC 334).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 1174.0
  • Bit_score: 2294
  • Evalue 0.0
Transcription-repair-coupling factor n=3 Tax=Lactobacillus casei group RepID=Q034V2_LACC3 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 1174.0
  • Bit_score: 2294
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 1174.0
  • Bit_score: 2294
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lactobacillus casei → Lactobacillus → Lactobacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3525
ATGAATTTGATCGACATGGTGCAGGCAGATCCAGCATTGTCGGCATTATGGCCGAAGCTGAAAACGGGTCGCCATTTGGTGACAGGACTGTCGGGCTCAGCCAAGACGGTCTTTTTTGGCGCGCTATTGCAACAGCGACCGCAGCAGATTCTAATTGTTGAAAACAATCGCTTTCATGCCGATGAATTAGCTGCTGATTTAAGCAGTTTGCTCGGAGATGCAATGGTTTACGATTTTCCAGTTGAGGATGTGTTGGCAGCTGAAGTCGCGGTTAGTTCGCCAGAGACGCGTAACGATCGTATTAATGCTTTGACGTTTATTCAAAGCGGCAAACCTGGGATCATCGTGACCAGTCTGGCCGGTTATAAGCGGCTTTTGCCGTCACCAGCCGATTGGGCAGCTAGTGAATTGGCCATTGATATGACTTCCGAGCTTGATCCGCAAACCGTTGCCAAACAGCTGGTCGCCATGGGCTATCGACGAGATTCGTTAGTCAGCGCGCCGGGACAGTTTGCCATTCGCGGCGGCATCATTGATGTCTATCCGTTGAATCAAGACGATCCGATTCGAATTGAATTGTTCGATACTGAAATCGATTCCATTCGCAGCTTTGACATTGCCACCCAACGTAGTCTGCAAAAACTTCAGCAGATCACGATTGCGCCGGCAACCGATATGGTGGCGACTGATCAGGTTTTGGCCGCTGCTGGCGAGCGCATTACCAAGCAAGCTAATGCCTACAAGGCAAAAGTGAAAAATGCCGCCGCTAAGCAGGCCGTTACAGATGGTTTATTGACGACTGGCCAGCAGCTATCGGCACACGAGCGTCCTGAAAATCTAGCTTTATATGCGGCCGAGCTATACCCAGAGCAGCAACGCATCAGTGACTATTTGCAACCAGATGCACTGGTAGCATTCGATGATTACAGTCGTTTGCTAGATAGCGATACAACCTTGGTGCAGGATACGGCAGAATGGTACTCACAGTTGCAAGAAGAAGGCCGGCTGCTACCTAACACGCCGAACCTGACGATTCAGGAACTTGCACAGCAAGATAAGCGCCCGCGGCTTTACCTTAGCCTTTTTCAAAAAGGCATGGGGCAGTTGCGACTTGACAGCTTGACCAATATTCCCAGCCGTAACGTGCAGCAATTTTTCAGTCAGATGCCGTTACTCAAAACAGAAACCGATCGCTGGGTAAAGCAGCAGCAAACCGTGGTGTTCTTGATCACAGATAAAAATCGGCTGGAAAAGCTGAGCGAAACGTTGTCAGATTTTGAGATTAGCAATGTCATGACAGCCCCGACTAAGCTGTTGCCAAGCCAGGTGCAATTGACAGAAGGCAGCCTGAAAAATGGCTTCGAGCTGCCCGACTTGAAATTAGTCGTTGTGACCGAGCACGAGTTATTCAATGCTCGCCAACGTCGTCACGCACGGCACCAAACACTGGCGAATACAGAGCGATTGCGCAGCTATAACGAGCTCAAGCCTGGTGACTACGTGGTGCATGTTAATCACGGGATCGGTCAATACACCGGGATGGAGACATTAGAAGTTGACGGTGTGCATCGTGATTACATTACGATTGTTTACCGCAACAACGATAAGCTGTTCATTCCAGTTGACCAACTGAATCTAGTCCAAAAATACGTTTCCGCAGATGGCAAAACGCCAAGCGTCAATAAACTTGGTGGTGCTGAGTGGCAGAAAACCAAACGCAAAGTAGCTGCCCGAATTGAAGATATCGCTGACGAATTAATTGATTTATATGCCAAGCGTGAAGCAGAAAAAGGGTTTGCATTTGGGCCGGATGATGACCTGCAGCACAAGTTCGAAGCGGAGTTTCCTTATCCTGAGACACCGGACCAGTTGCGGTCAGCCAAAGAAATTAAGCATGATATGGAAAAGCCGAAGCCAATGGATCGCTTATTGGTTGGCGATGTTGGGTTTGGCAAAACCGAAGTTGCGTTGCGTGCTGCTTTCAAGGCAATCGATTATGGCAAACAGGCAGCCATTTTGGTGCCGACAACGATTTTAGCCCAGCAACACTTTGACACGATGAAAGAACGGTTTGCGGACTTTCCAATCAAAGTCGGGTTGTTGTCACGATTCCAGACAGCGCATCAGAACAAGGAAACGATTAAGGGGCTTAAGAACGGCACCATTGATATTGTCGTTGGCACCCATCGGCTGTTGTCTAAAGATGTCGCTTTTCGGGATTTGGGATTGCTGGTCATTGATGAGGAACAGCGCTTTGGCGTTAAGCATAAGGAACGGATCAAACAACTCAAGAGTAATGTCGATGTGCTCACGCTGACGGCGACTCCGATTCCAAGAACGTTGAACATGTCCATGCTAGGTGTGCGTGATTTGAGTGTCATTGAAACGCCGCCAACGAATCGCTATCCGATTCAAACCTTTGTCATGGAGCAAAATCCAGGCGTGATTCGCGAAGCCATTGAACGGGAAATGGAACGCGGCGGTCAAGTCTTTTACCTGCATAACCGGGTGGAAGATATGGAACGTACCGTGAGTCAACTGGAGGAACTGGTGCCAGATGCAAGTGTCGGATATGCGCATGGTCAGATGACTGAGACGCAGTTGGAGAACGTCATTTATGACTTTTTGCACGGTGCTTACGATGTGCTCGTGACCACAACCATTATTGAAACTGGCGTGGACATGCCCAATGCCAATACTTTAATCATCGAGAATGCCGATCATTACGGTCTGTCACAACTTTATCAATTGCGCGGCCGAATTGGGCGGTCAAGTCGAGTCGCTTATGCGTACTTTATGTATCAGCCGATGAAGGTGCTCAATGAAGTTGCTGAAAAGCGGCTTCAGGCGATTAAAGATTTCACGGAATTGGGTAGTGGTTTCAAAATTGCGATGCGTGATCTATCGATTCGCGGAGCTGGCAACCTACTTGGCAAGCAGCAACATGGCTTCATCGATTCAGTGGGCTATGATCTTTACACCCAGATGCTGCAAGAAGCTGTTAATAAACGGCGCGGTATTAAATCGGCTGAGAAAACGGATGCTGAAATTGATCTGGGGCTGGAAGCATACCTGCCAACTGATTATGTGGCCGATTCCCGTCAGAAGATCGAGTTGTATAAACGCATTCGAGAAGCAGATAGCGATGAAGCCGAAACTGAGATCAGCGAAGATCTGATTGATCGTTTTGGTGACTATCCGCAACCGGTGACCAATTTATTGGCGATTGCGCATCTCAAGCGGTTTGCTGACTTGGCTTGGGTCAATCACGTAACGAAGGCGGGGCAAAAATTGACGGTTGTGTTGTCATCGCAAGCAACTGCTAAAGCACAAGGCGAGCCGATTTTCAAAGCGTTAAGTGCGACAACATTGAAAGCGCAGGTCGCGATCACGGATGGCAAGCTGACAGTTACGTTAGCATTGCCAAAAGATATGAAGACTGCGACTTGGCTTGATCAATTGACCGGCTTTTTGCAGGGATTACTGACTGTTGTCAATCCGCAACCGGAAAAGAAATCGGCATAG
PROTEIN sequence
Length: 1175
MNLIDMVQADPALSALWPKLKTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAMVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLAGYKRLLPSPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDDPIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQANAYKAKVKNAAAKQAVTDGLLTTGQQLSAHERPENLALYAAELYPEQQRISDYLQPDALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLYLSLFQKGMGQLRLDSLTNIPSRNVQQFFSQMPLLKTETDRWVKQQQTVVFLITDKNRLEKLSETLSDFEISNVMTAPTKLLPSQVQLTEGSLKNGFELPDLKLVVVTEHELFNARQRRHARHQTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIPVDQLNLVQKYVSADGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQKLTVVLSSQATAKAQGEPIFKALSATTLKAQVAITDGKLTVTLALPKDMKTATWLDQLTGFLQGLLTVVNPQPEKKSA*