ggKbase home page

L2_021_061G1_scaffold_19

Search features with annotation key words

Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_061G1_scaffold_19_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..218)
DNA (216bp) protein (72aa)
Elongation factor Tu n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I0N1_BIFLN
translation elongation factor Tu
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L2_021_061G1_scaffold_19_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(391..2514)
DNA (2124bp) protein (708aa)
Elongation factor G n=21 Tax=Bacteria RepID=EFG_BIFLD
elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L2_021_061G1_scaffold_19_3
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(2546..3016)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=24 Tax=Bifidobacterium RepID=RS7_BIFLD
rpsG; SSU ribosomal protein S7P
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L2_021_061G1_scaffold_19_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3022..3393)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=43 Tax=Bifidobacteriaceae RepID=RS12_BIFLO
30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_021_061G1_scaffold_19_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4159..5220)
DNA (1062bp) protein (354aa)
Transport protein n=11 Tax=Bifidobacterium RepID=F8ARV8_BIFLN
transport protein
Cholate efflux transporter Ctr {ECO:0000313|EMBL:BAP83215.1}; Ctr {ECO:0000313|EMBL:AAY78950.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L2_021_061G1_scaffold_19_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5554..6807
DNA (1254bp) protein (418aa)
L-threonine aldolase n=5 Tax=Bifidobacterium longum RepID=D6D9G6_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP83214.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L2_021_061G1_scaffold_19_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6954..8114)
DNA (1161bp) protein (387aa)
Glycosyltransferase n=10 Tax=Bifidobacterium longum RepID=D6D9G7_BIFLN
glycosyltransferase
Glycosyl transferase {ECO:0000313|EMBL:KEY32532.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L2_021_061G1_scaffold_19_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8288..9625
DNA (1338bp) protein (446aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Phosphoribosylglycinamide formyltransferase 2 n=9 Tax=Bifidobacterium RepID=E8MHC4_BIFL2
phosphoribosylglycinamide formyltransferase
L2_021_061G1_scaffold_19_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9810..9932
DNA (123bp) protein (41aa)
Uncharacterized protein n=13 Tax=Bifidobacterium longum RepID=V6XZY4_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ32273.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L2_021_061G1_scaffold_19_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10018..10770
DNA (753bp) protein (251aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000313|EMBL:CBK70823.1}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000313|EMBL:CBK70823.1};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=18 Tax=Bacteria RepID=PUR7_BIFLD
phosphoribosylaminoimidazolesuccinocarboxamide synthase
L2_021_061G1_scaffold_19_11
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10833..14567
DNA (3735bp) protein (1245aa)
Phosphoribosylformylglycinamidine synthase n=4 Tax=Bacteria RepID=D6ZT53_BIFLJ
phosphoribosylformylglycinamidine synthase
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:CCY95160.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L2_021_061G1_scaffold_19_12
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14704..16008
DNA (1305bp) protein (435aa)
Alpha/beta hydrolase fold protein n=2 Tax=Bacteria RepID=E5Y0H3_9BIFI
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EFV36657.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
lipase/esterase
L2_021_061G1_scaffold_19_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15981..17351
DNA (1371bp) protein (457aa)
Uncharacterized protein n=11 Tax=Bifidobacterium longum RepID=B3DT40_BIFLD
hypothetical protein
Alcohol acetyltransferase {ECO:0000313|EMBL:AIW43493.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L2_021_061G1_scaffold_19_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17348..18007
DNA (660bp) protein (220aa)
Hypothetical Zn-finger containing protein n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DT41_BIFLD
Zn-finger containing protein
Hypothetical Zn-finger containing protein {ECO:0000313|EMBL:ACD98310.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L2_021_061G1_scaffold_19_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18021..19535)
DNA (1515bp) protein (505aa)
Transporter, NhaC family (TC 2.A.35) n=9 Tax=Bifidobacterium RepID=D6D9H4_BIFLN
nhaC; nhac
Possible Na(+)/H(+) antiporter {ECO:0000313|EMBL:AAN24918.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_021_061G1_scaffold_19_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19754..20719
DNA (966bp) protein (322aa)
Transcriptional regulator n=8 Tax=Bifidobacterium longum RepID=E8MHB7_BIFL2
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEI97927.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L2_021_061G1_scaffold_19_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20827..21804
DNA (978bp) protein (326aa)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) n=13 Tax=Bifidobacterium RepID=D6D9H6_BIFLN
hypothetical protein
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EEQ54152.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L2_021_061G1_scaffold_19_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21838..22056)
DNA (219bp) protein (73aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=V6XV04_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEI81139.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L2_021_061G1_scaffold_19_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22053..23642)
DNA (1590bp) protein (530aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=Q8G5A2_BIFLO
hypothetical protein
ImpB/MucB/SamB family protein involved in DNA repair {ECO:0000313|EMBL:ESV33109.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L2_021_061G1_scaffold_19_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23807..25309
DNA (1503bp) protein (501aa)
S-adenosyl-L-homocysteine hydrolase n=6 Tax=Bifidobacterium RepID=E8MHB3_BIFL2
S-adenosyl-L-homocysteine hydrolase
S-adenosyl-L-homocysteine hydrolase {ECO:0000313|EMBL:BAJ66166.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L2_021_061G1_scaffold_19_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25349..26722
DNA (1374bp) protein (458aa)
Cytosine deaminase n=17 Tax=Bifidobacterium RepID=B3DT50_BIFLD
chlorohydrolase
Possible chlorohydrolase-like protein {ECO:0000313|EMBL:AAN24923.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_021_061G1_scaffold_19_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26792..27262
DNA (471bp) protein (157aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=Q8G599_BIFLO
hypothetical protein
Cupin domain protein, PF06172 family {ECO:0000313|EMBL:EIJ22380.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L2_021_061G1_scaffold_19_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27464..28327
DNA (864bp) protein (288aa)
Bacterial extracellular solute-binding s, 3 family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I047_BIFLN
Bacterial extracellular solute-binding s, 3 family protein {ECO:0000313|EMBL:CCK34535.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
hisJ4; amino acid ABC transporter/signal transduction systems periplasmic protein
L2_021_061G1_scaffold_19_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28437..29324
DNA (888bp) protein (296aa)
Permease of the ABC transporter n=5 Tax=Bifidobacterium RepID=V6XZX2_BIFLN
amino acid ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:KEY23242.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L2_021_061G1_scaffold_19_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29321..30106
DNA (786bp) protein (262aa)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=15 Tax=Bifidobacterium RepID=D6D9I2_BIFLN
amino acid ABC transporter ATP-binding protein
Arginine ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIW43481.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L2_021_061G1_scaffold_19_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30512..32023
DNA (1512bp) protein (504aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Amidophosphoribosyltransferase n=3 Tax=Bifidobacterium longum RepID=B3DT55_BIFLD
purF; glutamine phosphoribosylpyrophosphate amidotransferase
L2_021_061G1_scaffold_19_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32143..33180
DNA (1038bp) protein (346aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=5 Tax=Bifidobacterium longum RepID=PUR5_BIFLD
phosphoribosylaminoimidazole synthase
L2_021_061G1_scaffold_19_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33207..34475
DNA (1269bp) protein (423aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Phosphoribosylamine--glycine ligase n=16 Tax=Bifidobacterium RepID=B3DT57_BIFLD
purD; purd
L2_021_061G1_scaffold_19_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34850..36487)
DNA (1638bp) protein (546aa)
Aldehyde dehydrogenase (NAD(P)+) n=1 Tax=Bifidobacterium longum E18 RepID=V6XZW8_BIFLN
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
aldehyde dehydrogenase
L2_021_061G1_scaffold_19_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36608..38683)
DNA (2076bp) protein (692aa)
Arylsulfatase {ECO:0000313|EMBL:EEI81151.1}; EC=3.1.6.- {ECO:0000313|EMBL:EEI81151.1};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
MdoB1 n=2 Tax=Bifidobacterium longum subsp. longum RepID=E4QZS1_BIFLM
mdoB1; mdob1
Displaying items 1-30 of 141 in total

View Taxonomy