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L2_021_096G1_scaffold_254

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_096G1_scaffold_254_1
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1577
DNA (1575bp) protein (525aa)
UvrABC system protein A n=2 Tax=Citrobacter RepID=R8VPM7_9ENTR
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
excinuclease ABC subunit A
L2_021_096G1_scaffold_254_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1655..2011)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8M7_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:EIQ64869.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
L2_021_096G1_scaffold_254_3
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2132..2845)
DNA (714bp) protein (238aa)
Class B acid phosphatase {ECO:0000256|PIRNR:PIRNR017818}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR017818};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
aphA; acid phosphatase (EC:3.1.3.2)
Class B acid phosphatase n=5 Tax=Citrobacter RepID=C1MFI3_9ENTR
L2_021_096G1_scaffold_254_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3093..4286)
DNA (1194bp) protein (398aa)
aromatic amino acid aminotransferase (EC:2.6.1.57)
Aromatic-amino-acid aminotransferase n=2 Tax=Citrobacter RepID=J1FWQ2_9ENTR
Aromatic-amino-acid aminotransferase {ECO:0000313|EMBL:ETX71735.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L2_021_096G1_scaffold_254_5
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4416..5495)
DNA (1080bp) protein (360aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8N1_SHIFL
L2_021_096G1_scaffold_254_6
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5512..6714)
DNA (1203bp) protein (401aa)
Replicative DNA helicase {ECO:0000313|EMBL:EIQ64874.1}; EC=3.6.1.- {ECO:0000313|EMBL:EIQ64874.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Replicative DNA helicase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8N2_SHIFL
DNA helicase
L2_021_096G1_scaffold_254_7
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6739..6927)
DNA (189bp) protein (63aa)
Replicative DNA helicase {ECO:0000313|EMBL:EIQ64874.1}; EC=3.6.1.- {ECO:0000313|EMBL:EIQ64874.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Replicative DNA helicase n=7 Tax=Citrobacter RepID=C1MFI0_9ENTR
DNA helicase
L2_021_096G1_scaffold_254_8
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6992..7975
DNA (984bp) protein (328aa)
Quinone oxidoreductase {ECO:0000313|EMBL:CEJ62983.1}; EC=1.6.5.5 {ECO:0000313|EMBL:CEJ62983.1};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
GroES-like protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKT3_9ENTR
quinone oxidoreductase
L2_021_096G1_scaffold_254_9
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8277..8519)
DNA (243bp) protein (81aa)
Phage shock protein G n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKT4_9ENTR
Phage shock protein G {ECO:0000313|EMBL:EFE05510.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
pspG; phage shock protein
L2_021_096G1_scaffold_254_10
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8653..9651)
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
tRNA-dihydrouridine synthase n=2 Tax=Citrobacter RepID=K8QJF8_CITFR
tRNA-dihydrouridine synthase A
L2_021_096G1_scaffold_254_11
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9758..10246)
DNA (489bp) protein (163aa)
Cupin n=2 Tax=Enterobacter RepID=K4YGC3_9ENTR
Putative haemolysin/cytolysin secreted via TPS pathway {ECO:0000313|EMBL:CEJ62986.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
cupin
L2_021_096G1_scaffold_254_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10362..10880
DNA (519bp) protein (173aa)
Zinc uptake regulation protein n=10 Tax=Citrobacter RepID=C1MFH5_9ENTR
Ferric uptake regulator family protein {ECO:0000313|EMBL:KEL78285.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
zinc uptake transcriptional repressor
L2_021_096G1_scaffold_254_13
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10925..11137)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8P0_SHIFL
UPF0337 protein yjbJ {ECO:0000313|EMBL:CEJ62988.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
CsbD family protein
L2_021_096G1_scaffold_254_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11271..12590)
DNA (1320bp) protein (440aa)
DNA-damage-inducible protein F n=1 Tax=Citrobacter sp. KTE30 RepID=R8V7G4_9ENTR
Damage-inducible protein {ECO:0000313|EMBL:KJC06299.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
damage-inducible protein
L2_021_096G1_scaffold_254_15
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12712..13320)
DNA (609bp) protein (203aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
LexA repressor (EC:3.4.21.88)
LexA repressor n=6 Tax=Enterobacteriaceae RepID=C1MFH2_9ENTR
L2_021_096G1_scaffold_254_16
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13430..13798)
DNA (369bp) protein (123aa)
Diacylglycerol kinase {ECO:0000313|EMBL:EIQ64885.1}; EC=2.7.1.107 {ECO:0000313|EMBL:EIQ64885.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Diacylglycerol kinase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8P3_SHIFL
diacylglycerol kinase
L2_021_096G1_scaffold_254_17
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13970..16390
DNA (2421bp) protein (807aa)
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00393}; Short=GPAT {ECO:0000256|HAMAP-Rule:MF_00393};; EC=2.3.1.15 {ECO:0000256|HAMAP-Rule:MF_00393};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
glycerol-3-phosphate acyltransferase (EC:2.3.1.15)
Glycerol-3-phosphate acyltransferase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8P4_SHIFL
L2_021_096G1_scaffold_254_18
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16445..17317)
DNA (873bp) protein (291aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8P5_SHIFL
ubiA; 4-hydroxybenzoate polyprenyltransferase
L2_021_096G1_scaffold_254_19
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17331..17828)
DNA (498bp) protein (166aa)
Chorismate pyruvate-lyase {ECO:0000256|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000256|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000256|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000256|HAMAP-Rule:MF_01632};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Chorismate pyruvate-lyase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8P6_SHIFL
ubiC; chorismate--pyruvate lyase
L2_021_096G1_scaffold_254_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18009..18956)
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SAV7_CITFR
Maltose-binding protein {ECO:0000313|EMBL:KKC63772.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
maltose-binding protein
L2_021_096G1_scaffold_254_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19070..20425)
DNA (1356bp) protein (452aa)
Maltoporin n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SAV6_CITFR
lamB; maltoporin
Maltoporin {ECO:0000256|HAMAP-Rule:MF_01301}; Maltose-inducible porin {ECO:0000256|HAMAP-Rule:MF_01301}; Flags: Precursor;; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_021_096G1_scaffold_254_22
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20504..21613)
DNA (1110bp) protein (370aa)
Maltose/maltodextrin import ATP-binding protein MalK {ECO:0000256|HAMAP-Rule:MF_01709}; EC=3.6.3.19 {ECO:0000256|HAMAP-Rule:MF_01709};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
malK; maltose/maltodextrin transporter ATP-binding protein (EC:3.6.3.19)
Maltose/maltodextrin import ATP-binding protein MalK n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8P9_SHIFL
L2_021_096G1_scaffold_254_23
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21739..21978
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKU8_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EFE05524.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
malE; sugar ABC transporter substrate-binding protein
L2_021_096G1_scaffold_254_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21975..23165
DNA (1191bp) protein (397aa)
Maltose-binding periplasmic protein n=8 Tax=Enterobacteriaceae RepID=C1MFG4_9ENTR
Maltose-binding periplasmic protein {ECO:0000313|EMBL:KEL78296.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
maltose-binding periplasmic protein
Displaying 24 items

View Taxonomy