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L2_021_096G1_scaffold_266

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_096G1_scaffold_266_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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422..2812
DNA (2391bp) protein (797aa)
Stage II sporulation protein E {ECO:0000313|EMBL:EDT14430.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EDT14430.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVF1_CLOPF
L2_021_096G1_scaffold_266_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3029..4438
DNA (1410bp) protein (470aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
tilS; tRNA(Ile)-lysidine synthetase (EC:6.-.-.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RK83_CLOPF
L2_021_096G1_scaffold_266_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4441..4992
DNA (552bp) protein (184aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EDT71250.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EDT71250.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Hypoxanthine phosphoribosyltransferase n=4 Tax=Clostridium perfringens RepID=Q0TMI1_CLOP1
L2_021_096G1_scaffold_266_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5067..6872
DNA (1806bp) protein (602aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVE8_CLOPF
ftsH; ATP-dependent metalloprotease FtsH
L2_021_096G1_scaffold_266_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7074..8744
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVE7_CLOPF
formate--tetrahydrofolate ligase
L2_021_096G1_scaffold_266_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8947..9726
DNA (780bp) protein (260aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Type III pantothenate kinase n=10 Tax=Clostridium perfringens RepID=COAX_CLOP1
L2_021_096G1_scaffold_266_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9733..10713
DNA (981bp) protein (327aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
tRNA-dihydrouridine synthase n=10 Tax=Clostridium perfringens RepID=H7CZH2_CLOPF
putative dihydrouridine synthase
L2_021_096G1_scaffold_266_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10992..11468
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=11 Tax=Clostridium perfringens RepID=GREA_CLOP1
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_021_096G1_scaffold_266_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11494..12999
DNA (1506bp) protein (502aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00252}; EC=6.1.1.6 {ECO:0000255|HAMAP-Rule:MF_00252};; Lysyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00252}; Short=LysRS {ECO:0000255|HAMAP-Rule:MF_00252};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
Lysine--tRNA ligase n=5 Tax=Clostridium perfringens RepID=SYK_CLOPE
L2_021_096G1_scaffold_266_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13686..15089
DNA (1404bp) protein (468aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Glycine--tRNA ligase n=10 Tax=Clostridium perfringens RepID=SYG_CLOPE
L2_021_096G1_scaffold_266_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15277..16395
DNA (1119bp) protein (373aa)
Peptidase n=5 Tax=Clostridium perfringens RepID=H7CZG8_CLOPF
pepT; peptidase
Probable peptidase {ECO:0000313|EMBL:BAB82169.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_096G1_scaffold_266_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16569..17438
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVE0_CLOPF
mccF; LD-carboxypeptidase
Probable microcin immunity protein {ECO:0000313|EMBL:BAB82168.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_096G1_scaffold_266_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17531..18772
DNA (1242bp) protein (414aa)
Pyridine nucleotide-disulphide oxidoreductase n=2 Tax=Clostridium perfringens RepID=Q0TMJ1_CLOP1
oxidoreductase
Probable glutamate synthase small chain {ECO:0000313|EMBL:BAB82167.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_096G1_scaffold_266_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19014..20057)
DNA (1044bp) protein (348aa)
biotin synthase (EC:2.8.1.6)
Biotin synthase n=9 Tax=Clostridium perfringens RepID=H7CZG5_CLOPF
Radical SAM domain protein {ECO:0000313|EMBL:EDS80802.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_021_096G1_scaffold_266_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20368..21744
DNA (1377bp) protein (459aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000255|HAMAP-Rule:MF_00639}; EC=6.3.2.9 {ECO:0000255|HAMAP-Rule:MF_00639};; D-glutamic acid-adding enzyme {ECO:0000255|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000255|HAMAP-Rule:MF_00639}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=MURD_CLOPS
Displaying 15 items

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