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L2_021_096G1_scaffold_378

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_096G1_scaffold_378_1
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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167..970
DNA (804bp) protein (268aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEK8_SHIFL
STY3078 protein {ECO:0000313|EMBL:CEJ66103.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
beta-lactamase
L2_021_096G1_scaffold_378_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1116..1544
DNA (429bp) protein (143aa)
Universal stress protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEK9_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:EIQ79201.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
universal stress protein UspA
L2_021_096G1_scaffold_378_3
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1810..1989)
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Citrobacter freundii RepID=UPI0002F86121
Uncharacterized protein {ECO:0000313|EMBL:CEJ66105.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
hypothetical protein
L2_021_096G1_scaffold_378_4
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2026..2619
DNA (594bp) protein (198aa)
Bacterial regulatory s, luxR family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL1_SHIFL
Bacterial regulatory s, luxR family protein {ECO:0000313|EMBL:EIQ79203.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
fimbriae regulatory protein FimW
L2_021_096G1_scaffold_378_5
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2787..3515
DNA (729bp) protein (243aa)
EAL domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL2_SHIFL
EAL domain protein {ECO:0000313|EMBL:EIQ79204.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
L2_021_096G1_scaffold_378_6
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3539..4261
DNA (723bp) protein (241aa)
Fimbriae Y protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL3_SHIFL
Fimbriae Y protein {ECO:0000313|EMBL:EIQ79205.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
fimbriae Y protein
L2_021_096G1_scaffold_378_7
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4851..5483
DNA (633bp) protein (211aa)
Virulence factors putative positive transcription regulator BvgA n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL4_SHIFL
Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) {ECO:0000313|EMBL:CEJ66109.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
fimbriae Z protein
L2_021_096G1_scaffold_378_8
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5534..6070)
DNA (537bp) protein (179aa)
Fimbrial family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL5_SHIFL
Fimbrial family protein {ECO:0000313|EMBL:EIQ79207.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
fimF; adhesin
L2_021_096G1_scaffold_378_9
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6063..7031)
DNA (969bp) protein (323aa)
Protein fimH n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL6_SHIFL
Fimbriae-like adhesin SfmH {ECO:0000313|EMBL:CEJ66111.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
fimH; adhesin
L2_021_096G1_scaffold_378_10
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7075..9696)
DNA (2622bp) protein (874aa)
Fimbrial Usher family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL7_SHIFL
Outer membrane usher protein SfmD {ECO:0000313|EMBL:CEJ66112.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
fimbrial protein
L2_021_096G1_scaffold_378_11
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9704..10396)
DNA (693bp) protein (231aa)
Chaperone protein fimC n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL8_SHIFL
Fimbrial periplasmic chaperone SfmC {ECO:0000313|EMBL:CEJ66113.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
fimbrial chaperone protein FimC
L2_021_096G1_scaffold_378_12
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10438..10971)
DNA (534bp) protein (178aa)
Fimbrial family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEL9_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:CEJ66114.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
fimbrial protein FimI
L2_021_096G1_scaffold_378_13
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11048..11602)
DNA (555bp) protein (185aa)
Type-1 fimbrial protein, A chain n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEM0_SHIFL
Fimbriae-like adhesin SfmA {ECO:0000313|EMBL:CEJ66115.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
fimA; type-1 fimbrial protein subunit A
L2_021_096G1_scaffold_378_14
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12177..13043
DNA (867bp) protein (289aa)
Bifunctional protein FolD n=1 Tax=Shigella flexneri 1235-66 RepID=I6HEM1_SHIFL
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
methenyltetrahydrofolate cyclohydrolase
L2_021_096G1_scaffold_378_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13045..13257
DNA (213bp) protein (71aa)
Cytoplasmic protein n=5 Tax=Citrobacter RepID=J0LT69_9ENTR
Ribosome-associated protein {ECO:0000313|EMBL:KJC08000.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ribosome-associated protein
L2_021_096G1_scaffold_378_16
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13382..13906
DNA (525bp) protein (175aa)
Inner membrane protein ybcI n=2 Tax=Citrobacter RepID=C1M8D2_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:GAL45032.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
membrane protein
L2_021_096G1_scaffold_378_17
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13998..15383)
DNA (1386bp) protein (462aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
cysS; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H9L7_SHIFL
Displaying 17 items

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