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L2_021_096G1_scaffold_411

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_096G1_scaffold_411_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..180
DNA (180bp) protein (60aa)
[NiFe] hydrogenase maturation protein HypF n=1 Tax=Shigella flexneri 1235-66 RepID=I6GY61_SHIFL
[NiFe] hydrogenase maturation protein HypF {ECO:0000313|EMBL:EIQ73453.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
carbamoyl phosphate phosphatase
L2_021_096G1_scaffold_411_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(381..1514)
DNA (1134bp) protein (378aa)
Nitric oxide reductase FlRd-NAD(+) reductase {ECO:0000256|HAMAP-Rule:MF_01313, ECO:0000256|SAAS:SAAS00194831}; EC=1.18.1.- {ECO:0000256|HAMAP-Rule:MF_01313, ECO:0000256|SAAS:SAAS00194837};; Flavorubredoxin reductase {ECO:0000256|HAMAP-Rule:MF_01313}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Nitric oxide reductase FlRd-NAD(+) reductase n=4 Tax=Citrobacter RepID=J0M2V9_9ENTR
NADH:flavorubredoxin oxidoreductase
L2_021_096G1_scaffold_411_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1511..2959)
DNA (1449bp) protein (483aa)
Anaerobic nitric oxide reductase flavorubredoxin n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BFK7_CITFR
Anaerobic nitric oxide reductase flavorubredoxin {ECO:0000256|HAMAP-Rule:MF_01312}; Short=FlRd {ECO:0000256|HAMAP-Rule:MF_01312};; Short=FlavoRb {ECO:0000256|HAMAP-Rule:MF_01312};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
nitric oxide reductase
L2_021_096G1_scaffold_411_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3148..4668
DNA (1521bp) protein (507aa)
Anaerobic nitric oxide reductase transcription regulator NorR n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SA00_CITFR
Anaerobic nitric oxide reductase transcription regulator NorR {ECO:0000256|HAMAP-Rule:MF_01314, ECO:0000256|SAAS:SAAS00009293}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
transcriptional regulator
L2_021_096G1_scaffold_411_5
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4665..5630)
DNA (966bp) protein (322aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
Arabinose 5-phosphate isomerase n=1 Tax=Citrobacter sp. KTE32 RepID=R8V3T2_9ENTR
arabinose 5-phosphate isomerase
L2_021_096G1_scaffold_411_6
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5623..6396)
DNA (774bp) protein (258aa)
Glucitol operon repressor n=9 Tax=Citrobacter RepID=C1MAM7_9ENTR
Glucitol operon repressor {ECO:0000313|EMBL:EOQ46761.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
srlR; transcriptional regulator
L2_021_096G1_scaffold_411_7
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6465..6824)
DNA (360bp) protein (120aa)
Glucitol operon activator family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6GY55_SHIFL
Glucitol operon activator protein {ECO:0000313|EMBL:CEJ65634.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
transcriptional regulator
L2_021_096G1_scaffold_411_8
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6880..7659)
DNA (780bp) protein (260aa)
Sorbitol-6-phosphate 2-dehydrogenase {ECO:0000313|EMBL:EIQ73446.1}; EC=1.1.1.140 {ECO:0000313|EMBL:EIQ73446.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
sorbitol-6-phosphate 2-dehydrogenase (EC:1.1.1.140)
Sorbitol-6-phosphate 2-dehydrogenase n=1 Tax=Shigella flexneri 1235-66 RepID=I6GY54_SHIFL
L2_021_096G1_scaffold_411_9
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7677..8039)
DNA (363bp) protein (121aa)
PTS system glucitol/sorbitol-specific IIA component family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6GY53_SHIFL
PTS system, glucitol/sorbitol-specific IIA component {ECO:0000313|EMBL:CEJ65636.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
PTS system glucitol/sorbitol-specific transporter subunit IIA
L2_021_096G1_scaffold_411_10
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8053..9024)
DNA (972bp) protein (324aa)
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components {ECO:0000313|EMBL:CEJ65637.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CEJ65637.1};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
Glucitol/sorbitol-specific phosphotransferase enzyme IIB component n=1 Tax=Citrobacter sp. KTE32 RepID=R8V3S5_9ENTR
srlE; PTS system glucitol/sorbitol-specific transporter subunit IIB
L2_021_096G1_scaffold_411_11
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9021..9584)
DNA (564bp) protein (188aa)
Glucitol/sorbitol permease IIC component n=2 Tax=Citrobacter freundii complex RepID=D4BHD8_9ENTR
srlA; PTS system glucitol/sorbitol-specific transporter subunit IIC
Glucitol/sorbitol permease IIC component {ECO:0000313|EMBL:EFE06888.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
L2_021_096G1_scaffold_411_12
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9849..10928
DNA (1080bp) protein (360aa)
Membrane-bound lytic murein transglycosylase B n=1 Tax=Citrobacter sp. KTE151 RepID=R8WPA1_9ENTR
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:EOQ46755.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
murein hydrolase effector LrgB
L2_021_096G1_scaffold_411_13
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11120..11617
DNA (498bp) protein (166aa)
Protein YgaD n=2 Tax=Citrobacter RepID=R8V2X5_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:GAL45391.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
hypothetical protein
L2_021_096G1_scaffold_411_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11710..12774
DNA (1065bp) protein (355aa)
Protein RecA n=8 Tax=Citrobacter RepID=C1MAL9_9ENTR
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
recA; recombinase A
L2_021_096G1_scaffold_411_15
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12861..13361
DNA (501bp) protein (167aa)
Regulatory protein RecX n=1 Tax=Citrobacter sp. 30_2 RepID=C1MAL8_9ENTR
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
recX; recombination regulator RecX
L2_021_096G1_scaffold_411_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13490..14506
DNA (1017bp) protein (339aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Alanine--tRNA ligase n=3 Tax=Citrobacter RepID=J1G0I0_9ENTR
alanyl-tRNA synthetase
Displaying 16 items

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