ggKbase home page

L2_021_096G1_scaffold_528

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_096G1_scaffold_528_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..438)
DNA (438bp) protein (146aa)
Regulator of sigma D n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6I1_SHIFL
Regulator of sigma D {ECO:0000256|HAMAP-Rule:MF_01181, ECO:0000256|SAAS:SAAS00010112}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
anti-RNA polymerase sigma 70 factor
L2_021_096G1_scaffold_528_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

535..1308
DNA (774bp) protein (258aa)
NADH pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016168}; EC=3.6.1.22 {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016202};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
NADH pyrophosphatase n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6I0_SHIFL
nudC; NADH pyrophosphatase
L2_021_096G1_scaffold_528_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1359..2423
DNA (1065bp) protein (355aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=2 Tax=Citrobacter freundii RepID=G9SB64_CITFR
L2_021_096G1_scaffold_528_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2433..3116
DNA (684bp) protein (228aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
endonuclease V (EC:3.1.21.7)
Endonuclease V n=5 Tax=Citrobacter RepID=J0M0R7_9ENTR
L2_021_096G1_scaffold_528_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3150..3740
DNA (591bp) protein (197aa)
Uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=I6G6H7_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:KJC04472.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_021_096G1_scaffold_528_6
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3927..4199
DNA (273bp) protein (91aa)
DNA-binding protein HU-alpha n=586 Tax=Enterobacteriaceae RepID=DBHA_SALTI
hupA; histone like DNA-binding protein HU-alpha (NS2) (HU-2)
DNA-binding protein HU-alpha {ECO:0000313|EMBL:ACH51095.1}; TaxID=454166 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella agona (strain SL483).;"
L2_021_096G1_scaffold_528_7
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4211..4903
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G6H5_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:EIQ64117.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
membrane protein
L2_021_096G1_scaffold_528_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4965..5408)
DNA (444bp) protein (148aa)
Zinc resistance protein n=2 Tax=Citrobacter freundii RepID=K8QME2_CITFR
Zinc resistance protein {ECO:0000313|EMBL:KJC00704.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
zraP; zinc resistance protein
L2_021_096G1_scaffold_528_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5427..5615)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MGA2_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KJC00705.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
L2_021_096G1_scaffold_528_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5673..7058
DNA (1386bp) protein (462aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Sensor protein ZraS n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CGD2_CITFR
sensor protein ZraS
L2_021_096G1_scaffold_528_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7064..8389
DNA (1326bp) protein (442aa)
Transcriptional regulatory protein ZraR n=3 Tax=Citrobacter RepID=J0VM43_9ENTR
Response regulator of zinc sigma-54-dependent two-component system {ECO:0000313|EMBL:CDL40893.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
transcriptional regulator
L2_021_096G1_scaffold_528_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8386..9675)
DNA (1290bp) protein (430aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UIG3_9ENTR
Phosphoribosylamine--glycine ligase
L2_021_096G1_scaffold_528_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9691..11268)
DNA (1578bp) protein (526aa)
IMP cyclohydrolase n=1 Tax=Citrobacter freundii RepID=UPI0003067FFF
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Displaying 13 items

View Taxonomy