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L2_021_124G1_scaffold_327

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_124G1_scaffold_327_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..2501
DNA (2499bp) protein (833aa)
Chromosome partition protein Smc n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RHU0_CLOPF
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
smc; chromosome segregation protein SMC
L2_021_124G1_scaffold_327_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2515..3429
DNA (915bp) protein (305aa)
Signal recognition particle receptor FtsY n=3 Tax=Clostridium perfringens RepID=H7CXB1_CLOPF
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
ftsY; signal recognition particle-docking protein FtsY
L2_021_124G1_scaffold_327_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3605..3943
DNA (339bp) protein (113aa)
UPF0122 protein CPE1714 n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Y1714_CLOPE
DNA-binding protein
UPF0122 protein CPE1714; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_124G1_scaffold_327_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3955..5313
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CS50_CLOPF
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L2_021_124G1_scaffold_327_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5347..5592
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=11 Tax=Clostridium perfringens RepID=RS16_CLOP1
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_021_124G1_scaffold_327_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5636..5863
DNA (228bp) protein (76aa)
UPF0109 protein CPE1711 n=7 Tax=Clostridium perfringens RepID=Y1711_CLOPE
hypothetical protein
UPF0109 protein CPR_1683 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L2_021_124G1_scaffold_327_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5919..6416
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=8 Tax=Clostridium perfringens RepID=RIMM_CLOP1
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_021_124G1_scaffold_327_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6406..7116
DNA (711bp) protein (237aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Clostridium perfringens RepID=B1RQ78_CLOPF
L2_021_124G1_scaffold_327_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7237..7584
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=8 Tax=Clostridium perfringens RepID=RL19_CLOP1
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L2_021_124G1_scaffold_327_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7731..8576
DNA (846bp) protein (282aa)
Ribosome biogenesis GTPase A n=2 Tax=Clostridium perfringens RepID=B1BXY9_CLOPF
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
rbgA; ribosomal biogenesis GTPase
L2_021_124G1_scaffold_327_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8592..9410
DNA (819bp) protein (273aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000255|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000255|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00052};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
Ribonuclease HII n=2 Tax=Clostridium perfringens RepID=RNH2_CLOP1
L2_021_124G1_scaffold_327_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9411..9779)
DNA (369bp) protein (123aa)
UPF0102 protein AC5_A0141 n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RKR7_CLOPF
UPF0102 protein AC5_A0141 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
hypothetical protein
L2_021_124G1_scaffold_327_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9909..11432
DNA (1524bp) protein (508aa)
Mg chelatase homolog n=2 Tax=Clostridium perfringens RepID=Q0TPP9_CLOP1
Mg chelatase-like protein
Mg chelatase homolog {ECO:0000313|EMBL:EDT23480.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L2_021_124G1_scaffold_327_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11433..12518
DNA (1086bp) protein (362aa)
DNA protecting protein DprA n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RKR5_CLOPF
DNA protecting protein DprA {ECO:0000313|EMBL:EDT25453.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
smf; DNA protecting protein DprA
L2_021_124G1_scaffold_327_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12512..14662
DNA (2151bp) protein (717aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=2 Tax=Clostridium perfringens RepID=B1BG09_CLOPF
L2_021_124G1_scaffold_327_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14804..15580
DNA (777bp) protein (259aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=11 Tax=Clostridium perfringens RepID=CODY_CLOP1
codY; transcriptional repressor CodY
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_021_124G1_scaffold_327_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15962..16663
DNA (702bp) protein (234aa)
30S ribosomal protein S2 n=8 Tax=Clostridium perfringens RepID=RS2_CLOP1
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L2_021_124G1_scaffold_327_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16743..17654
DNA (912bp) protein (304aa)
Elongation factor Ts n=7 Tax=Clostridium perfringens RepID=EFTS_CLOP1
tsf; elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_021_124G1_scaffold_327_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17747..18460
DNA (714bp) protein (238aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Uridylate kinase n=10 Tax=Clostridium perfringens RepID=PYRH_CLOP1
L2_021_124G1_scaffold_327_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18471..19028
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPL3_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
frr; ribosome-recycling factor Frr
L2_021_124G1_scaffold_327_21
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19098..19580
DNA (483bp) protein (161aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Clostridium colicanis 209318 RepID=N9XPZ8_9CLOT
Displaying 21 items

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