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L2_021_124G1_scaffold_344

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_124G1_scaffold_344_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..88)
DNA (87bp) protein (29aa)
Ribosome-binding factor A n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BWX4_CLOPF
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_021_124G1_scaffold_344_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(110..2149)
DNA (2040bp) protein (680aa)
Translation initiation factor IF-2 n=9 Tax=Clostridium perfringens RepID=IF2_CLOP1
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L2_021_124G1_scaffold_344_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2180..2482)
DNA (303bp) protein (101aa)
Ribosomal protein L7Ae family protein n=7 Tax=Clostridium perfringens RepID=H7CX83_CLOPF
ribosomal protein L7Ae family protein
Ribosomal protein, L7Ae family {ECO:0000313|EMBL:EDT13816.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_021_124G1_scaffold_344_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2475..2741)
DNA (267bp) protein (89aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=H7CX84_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81394.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_124G1_scaffold_344_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2769..3869)
DNA (1101bp) protein (367aa)
Transcription elongation factor NusA n=7 Tax=Clostridium perfringens RepID=H7CX85_CLOPF
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_021_124G1_scaffold_344_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3889..4353)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=7 Tax=Clostridium perfringens RepID=RIMP_CLOP1
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L2_021_124G1_scaffold_344_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4586..8935)
DNA (4350bp) protein (1450aa)
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
DNA polymerase III PolC-type n=2 Tax=Clostridium perfringens RepID=DPO3_CLOPE
L2_021_124G1_scaffold_344_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9013..10062)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000255|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000255|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00159}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=ISPG_CLOPE
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
L2_021_124G1_scaffold_344_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10082..11089)
DNA (1008bp) protein (336aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Putative zinc metalloprotease CPE1693 n=4 Tax=Clostridium perfringens RepID=Y1693_CLOPE
hypothetical protein
L2_021_124G1_scaffold_344_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11101..12255)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQ62_CLOPF
L2_021_124G1_scaffold_344_11
unknown

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comp(12683..12859)
DNA (177bp) protein (59aa)

This feature has no annotations

L2_021_124G1_scaffold_344_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12882..13274)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FSG9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84617.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_021_124G1_scaffold_344_13
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13297..14019)
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum RepID=F4ABF8_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:KAJ50928.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
hypothetical protein
L2_021_124G1_scaffold_344_14
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14030..15340)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0002EF9360
Uncharacterized protein {ECO:0000313|EMBL:KAJ50142.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
L2_021_124G1_scaffold_344_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15353..16060)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WHB5_9CLOT
response regulator
Response regulator {ECO:0000313|EMBL:AIY83572.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_021_124G1_scaffold_344_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16239..17033)
DNA (795bp) protein (265aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Phosphatidate cytidylyltransferase n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BYE0_CLOPF
cdsA; phosphatidate cytidylyltransferase
L2_021_124G1_scaffold_344_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17051..17812)
DNA (762bp) protein (254aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Isoprenyl transferase n=11 Tax=Clostridium perfringens RepID=ISPT_CLOPE
uppS; undecaprenyl pyrophosphate synthase
L2_021_124G1_scaffold_344_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17877..18434)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=11 Tax=Clostridium perfringens RepID=RRF_CLOP1
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Displaying 18 items

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