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L2_021_251G1_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 158 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_3_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..501
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V883_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49825.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_021_251G1_scaffold_3_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

786..1319
DNA (534bp) protein (178aa)
Transcriptional regulator, MarR family n=2 Tax=Bifidobacterium bifidum RepID=E3ELZ5_BIFBS
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADO52691.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_251G1_scaffold_3_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1316..3199
DNA (1884bp) protein (628aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I6B2_BIFBI
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE50364.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
yfiB; ABC transporter ATP-binding protein
L2_021_251G1_scaffold_3_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3196..5211
DNA (2016bp) protein (672aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGM1_BIFBI
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04034.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
mdlB; ABC transporter ATP-binding protein
L2_021_251G1_scaffold_3_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5448..6434)
DNA (987bp) protein (329aa)
Phospholipase, patatin family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIQ9_BIFBI
Phospholipase, patatin family {ECO:0000313|EMBL:ERI83953.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97663.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
phospholipase
L2_021_251G1_scaffold_3_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6513..7322)
DNA (810bp) protein (270aa)
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate racemase n=6 Tax=Bifidobacterium bifidum RepID=E3ELZ9_BIFBS
L2_021_251G1_scaffold_3_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7550..8449
DNA (900bp) protein (300aa)
dapF; diaminopimelate epimerase DapF (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|SAAS:SAAS00028055}; EC=5.1.1.7 {ECO:0000256|SAAS:SAAS00028063};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
DapF Diaminopimelate epimerase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P079_BIFBP
L2_021_251G1_scaffold_3_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8550..9209)
DNA (660bp) protein (220aa)
Vitamin K epoxide reductase n=3 Tax=Bifidobacterium bifidum RepID=I3WGM6_BIFBI
vitamin K epoxide reductase
Vitamin K epoxide reductase {ECO:0000313|EMBL:EKF15603.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_251G1_scaffold_3_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9345..10226
DNA (882bp) protein (294aa)
PHP domain protein n=3 Tax=Bifidobacterium bifidum RepID=U2DQR9_BIFBI
putative metal-dependent phosphoesterase
Putative metal-dependent phosphoesterase {ECO:0000313|EMBL:AFL04040.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_251G1_scaffold_3_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10385..10609)
DNA (225bp) protein (75aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2M115_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42546.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_3_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10766..12244)
DNA (1479bp) protein (493aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0G4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83959.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
aminoglycoside phosphotransferase
L2_021_251G1_scaffold_3_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12379..13887
DNA (1509bp) protein (503aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
UvrD/REP helicase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVX0_BIFBI
uvrD2; DNA helicase II containing UvrD/REP helicase domain
L2_021_251G1_scaffold_3_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13946..15490)
DNA (1545bp) protein (515aa)
Putative hydrolase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DQS3_BIFBI
Putative hydrolase {ECO:0000313|EMBL:ERI83962.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97671.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_251G1_scaffold_3_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15552..16400
DNA (849bp) protein (283aa)
Lon protease (S16) C-terminal proteolytic domain n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I6C0_BIFBI
Lon protease (S16) C-terminal proteolytic domain {ECO:0000313|EMBL:EKE50374.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Lon protease (S16) C-terminal proteolytic domain
L2_021_251G1_scaffold_3_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16596..17021
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0H1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83964.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_251G1_scaffold_3_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17205..18248)
DNA (1044bp) protein (348aa)
Glucose-resistance amylase regulator n=2 Tax=Bifidobacterium bifidum RepID=K2H8Q2_BIFBI
Glucose-resistance amylase regulator {ECO:0000313|EMBL:EKE50376.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ccpA; glucose-resistance amylase regulator
L2_021_251G1_scaffold_3_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18393..18767)
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V8A0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50377.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_021_251G1_scaffold_3_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18871..19767)
DNA (897bp) protein (299aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=3 Tax=Bifidobacterium RepID=I3WGN6_BIFBI
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CDB22988.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_3_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19875..21083
DNA (1209bp) protein (403aa)
ATPase family associated with various cellular activities (AAA) n=6 Tax=Bifidobacterium RepID=E3EM12_BIFBS
ATPase family associated with various cellular activities (AAA)
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EKF16483.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_251G1_scaffold_3_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21663..22136)
DNA (474bp) protein (158aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGN8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42556.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_3_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22259..25015)
DNA (2757bp) protein (919aa)
Phosphomethylpyrimidine synthase {ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|SAAS:SAAS00007809};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
thiC; thiamine biosynthesis protein (EC:2.5.1.3)
Thiamine biosynthesis protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGN9_BIFBI
L2_021_251G1_scaffold_3_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25110..26003)
DNA (894bp) protein (298aa)
thiM; hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Hydroxyethylthiazole kinase n=7 Tax=Bifidobacterium RepID=E3EMP4_BIFBS
L2_021_251G1_scaffold_3_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26397..32204
DNA (5808bp) protein (1936aa)
Beta-galactosidase BbgIII n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMP5_BIFBS
Beta-galactosidase BbgIII {ECO:0000313|EMBL:ADO52712.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
beta-galactosidase BbgIII
L2_021_251G1_scaffold_3_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


32380..33900
DNA (1521bp) protein (507aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H9U0_9BIFI
L2_021_251G1_scaffold_3_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33991..35271
DNA (1281bp) protein (427aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2MSF0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15043.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_251G1_scaffold_3_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35423..36700
DNA (1278bp) protein (426aa)
Cell division protein FtsZ n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2INP8_BIFBI
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ftsZ; cell division protein FtsZ
L2_021_251G1_scaffold_3_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36722..37192
DNA (471bp) protein (157aa)
Cell division protein SepF n=8 Tax=Bifidobacterium RepID=E3EMP9_BIFBS
hypothetical protein
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_3_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37320..37601
DNA (282bp) protein (94aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=E4V8B3_BIFBI
tlyC; putative hemolysin
Conserved hypothetical membrane spanning protein with YGGT family {ECO:0000313|EMBL:CDB22978.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_3_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37711..39012
DNA (1302bp) protein (434aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGP7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04060.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_251G1_scaffold_3_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39016..39693
DNA (678bp) protein (226aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Lipoprotein signal peptidase n=7 Tax=Bifidobacterium RepID=E3EMQ2_BIFBS
lspA; lipoprotein signal peptidase
Displaying items 1-30 of 158 in total

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