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L2_021_251G1_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_25_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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602..1786
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67655.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
AraC family transcriptional regulator
L2_021_251G1_scaffold_25_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1920..3302
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67654.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L2_021_251G1_scaffold_25_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3352..4269
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 PF2_9FIRM">RepID=R5TPF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67653.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
nucleoside hydrolase
L2_021_251G1_scaffold_25_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4286..5221
DNA (936bp) protein (312aa)
glucokinase (EC:2.7.1.2)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67652.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_25_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5221..6636
DNA (1416bp) protein (472aa)
6-phospho-beta-glucosidase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U912_9FIRM
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CCZ67651.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
6-phospho-beta-glucosidase
L2_021_251G1_scaffold_25_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6968..8044
DNA (1077bp) protein (359aa)
Protein RecA n=4 Tax=Clostridiales RepID=A7B2G7_RUMGN
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
protein RecA
L2_021_251G1_scaffold_25_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8048..8662
DNA (615bp) protein (205aa)
Regulatory protein RecX n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWG3_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
recX; recombination regulator RecX
L2_021_251G1_scaffold_25_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8757..10310
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Ribonuclease Y n=4 Tax=Clostridiales RepID=A7B2G9_RUMGN
metal dependent phosphohydrolase
L2_021_251G1_scaffold_25_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10406..10951
DNA (546bp) protein (182aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67647.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_25_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11004..11543
DNA (540bp) protein (180aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5U910_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49420.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_021_251G1_scaffold_25_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11540..12859)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67645.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L2_021_251G1_scaffold_25_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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13004..13474
DNA (471bp) protein (157aa)
Transcriptional regulator, Rrf2 family n=3 Tax=Lachnospiraceae RepID=A7B2H3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49418.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transcriptional regulator, BadM/Rrf2 family
L2_021_251G1_scaffold_25_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13492..14679
DNA (1188bp) protein (396aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPE4_9FIRM
L2_021_251G1_scaffold_25_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14697..15140
DNA (444bp) protein (148aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Clostridiales RepID=A7B2H5_RUMGN
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CCZ67642.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L2_021_251G1_scaffold_25_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15142..16212
DNA (1071bp) protein (357aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=4 Tax=Clostridiales RepID=A7B2H6_RUMGN
L2_021_251G1_scaffold_25_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16209..17027
DNA (819bp) protein (273aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67640.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_25_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17177..18190
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=3 Tax=Lachnospiraceae RepID=A7B2H8_RUMGN
L2_021_251G1_scaffold_25_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18316..19509
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPE2_9FIRM
L2_021_251G1_scaffold_25_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19718..20431
DNA (714bp) protein (238aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=4 Tax=Clostridiales RepID=A7B2I0_RUMGN
L2_021_251G1_scaffold_25_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20546..23194
DNA (2649bp) protein (883aa)
Magnesium-translocating P-type ATPase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U905_9FIRM
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:CCZ67636.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_021_251G1_scaffold_25_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23213..23686
DNA (474bp) protein (158aa)
Transcriptional regulatory protein, C-terminal domain protein n=3 Tax=Clostridiales RepID=A7B308_RUMGN
Transcriptional regulatory protein C-terminal domain protein {ECO:0000313|EMBL:CCZ67635.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
putative transcriptional regulatorTn916-like,CTn7-Orf11
L2_021_251G1_scaffold_25_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23949..26714
DNA (2766bp) protein (922aa)
mgtA; magnesium-transporting ATPase (EC:3.6.3.2)
Magnesium-translocating P-type ATPase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWE9_9FIRM
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:CCZ67634.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_25_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26730..26819
DNA (90bp) protein (30aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B311_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49407.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_021_251G1_scaffold_25_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26995..27753
DNA (759bp) protein (253aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B312_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49406.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tim44-like domain protein
L2_021_251G1_scaffold_25_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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27866..29404
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=3 Tax=Lachnospiraceae RepID=A7B313_RUMGN
L2_021_251G1_scaffold_25_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29513..30016
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=3 Tax=Lachnospiraceae RepID=A7B314_RUMGN
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
transcription elongation factor GreA
L2_021_251G1_scaffold_25_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30029..30691
DNA (663bp) protein (221aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67629.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_25_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30801..31061
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67628.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_021_251G1_scaffold_25_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31077..31307
DNA (231bp) protein (77aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5UFL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49401.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_021_251G1_scaffold_25_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31351..31677
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67626.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Thermophilic glucose-6-phosphate isomerase and related metalloenzymes
Displaying items 1-30 of 104 in total

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