ggKbase home page

L2_021_251G1_scaffold_31

Search features with annotation key words

Displaying items 1-30 of 277 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_31_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(97..1272)
DNA (1176bp) protein (392aa)
Transcriptional regulator, PucR family n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KDC0_CLOBU
Purine catabolism regulatory protein-like protein family {ECO:0000313|EMBL:ETI90712.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
PucR family transcriptional regulator
L2_021_251G1_scaffold_31_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1537..2340
DNA (804bp) protein (268aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KHD16601.1}; EC=2.6.1.19 {ECO:0000313|EMBL:KHD16601.1};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
gabT2; 4-aminobutyrate aminotransferase GabT2 (EC:2.6.1.19)
4-aminobutyrate transaminase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ATW0_CLOBU
L2_021_251G1_scaffold_31_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2353..2898
DNA (546bp) protein (182aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KHD16601.1}; EC=2.6.1.19 {ECO:0000313|EMBL:KHD16601.1};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
(S)-3-amino-2-methylpropionate transaminase (EC:2.6.1.22)
UPI0003D59979 related cluster n=1 Tax=unknown RepID=UPI0003D59979
L2_021_251G1_scaffold_31_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2929..4059
DNA (1131bp) protein (377aa)
1,3-propanediol dehydrogenase n=2 Tax=Clostridium butyricum RepID=B1QSF5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36165.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
iron-containing alcohol dehydrogenase
L2_021_251G1_scaffold_31_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4118..5332
DNA (1215bp) protein (405aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
acetylornithine aminotransferase apoenzyme (EC:2.6.1.17 2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z8J8_CLOBU
L2_021_251G1_scaffold_31_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5758..6123
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AVX0_CLOBU
Chemotaxis protein CheY {ECO:0000313|EMBL:ETI90716.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L2_021_251G1_scaffold_31_7
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6468..7172)
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LTR1_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD69476.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_021_251G1_scaffold_31_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7358..8269
DNA (912bp) protein (304aa)
Putative sporulation protein YtxC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSC6_CLOSA
ytxC; putative sporulation protein YtxC
Putative sporulation protein YtxC {ECO:0000313|EMBL:AGX43714.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_021_251G1_scaffold_31_9
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8386..8946
DNA (561bp) protein (187aa)
translation initiation factor IF-3 n=1 Tax=Clostridium beijerinckii RepID=UPI0002DD47D2
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_021_251G1_scaffold_31_10
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8968..9165
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MNT1_9CLOT
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_021_251G1_scaffold_31_11
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9194..9553
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Clostridium sp. DL-VIII RepID=G7M0Z4_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
rplT; 50S ribosomal protein L20
L2_021_251G1_scaffold_31_12
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9695..11038
DNA (1344bp) protein (448aa)
TrkH family potassium uptake protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WFQ1_9CLOT
TrkH family potassium uptake protein {ECO:0000313|EMBL:ENZ01926.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
potassium uptake , TrkH family protein
L2_021_251G1_scaffold_31_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11043..11723
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDS1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97614.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
potassium uptake protein
L2_021_251G1_scaffold_31_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11734..12522
DNA (789bp) protein (263aa)
ysgA; tRNA/rRNA methyltransferase YsgA (EC:2.1.1.-)
tRNA/rRNA methyltransferase YsgA {ECO:0000313|EMBL:AGX43710.1}; EC=2.1.1.- {ECO:0000313|EMBL:AGX43710.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA/rRNA methyltransferase YsgA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSY8_CLOSA
L2_021_251G1_scaffold_31_15
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12888..13907
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Clostridium RepID=SYFA_CLOB8
pheS; phenylalanyl-tRNA synthetase subunit alpha
L2_021_251G1_scaffold_31_16
unknown

Not on your lists

14079..14195
DNA (117bp) protein (39aa)

This feature has no annotations

L2_021_251G1_scaffold_31_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14433..16868
DNA (2436bp) protein (812aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Clostridium beijerinckii RepID=UPI0003101236
pheT; phenylalanyl-tRNA synthetase subunit beta
L2_021_251G1_scaffold_31_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17169..17597
DNA (429bp) protein (143aa)
Protein MraZ n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TVY5_9CLOT
cell division protein MraZ
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L2_021_251G1_scaffold_31_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17610..18542
DNA (933bp) protein (311aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rsmH; ribosomal RNA small subunit methyltransferase H (EC:2.1.1.199)
Ribosomal RNA small subunit methyltransferase H n=4 Tax=Clostridium butyricum RepID=B1QW60_CLOBU
L2_021_251G1_scaffold_31_20
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18597..19109
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G1D4_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD69467.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_021_251G1_scaffold_31_21
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19226..21433
DNA (2208bp) protein (736aa)
Stage V sporulation protein D {ECO:0000313|EMBL:AJG98395.1}; EC=2.4.1.129 {ECO:0000313|EMBL:AJG98395.1};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Stage V sporulation protein D n=2 Tax=Clostridium RepID=A6LTS2_CLOB8
stage V sporulation protein D
L2_021_251G1_scaffold_31_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21515..22972
DNA (1458bp) protein (486aa)
murE2; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MT41_CLOSA
L2_021_251G1_scaffold_31_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23030..24406
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M2T0_9CLOT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
L2_021_251G1_scaffold_31_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24424..25398
DNA (975bp) protein (325aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase MraY (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVN2_CLOSA
L2_021_251G1_scaffold_31_25
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25420..26541
DNA (1122bp) protein (374aa)
Stage V sporulation protein E n=1 Tax=Clostridium sp. DL-VIII RepID=G7M2T2_9CLOT
spoVE2; stage V sporulation protein E
Stage V sporulation protein E {ECO:0000313|EMBL:EHI99584.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
L2_021_251G1_scaffold_31_26
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26697..27449
DNA (753bp) protein (251aa)
Cell division protein DivIB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSB0_CLOSA
divIB; cell division protein DivIB
Cell division protein DivIB {ECO:0000313|EMBL:AGX43699.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_021_251G1_scaffold_31_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27548..28276
DNA (729bp) protein (243aa)
Division initiation protein n=4 Tax=Clostridium butyricum RepID=B1QW51_CLOBU
Division initiation protein {ECO:0000313|EMBL:KHD16889.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_021_251G1_scaffold_31_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28289..28666
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW70_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83186.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_021_251G1_scaffold_31_29
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28663..29406
DNA (744bp) protein (248aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LTT1_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR33761.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_021_251G1_scaffold_31_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29502..30164
DNA (663bp) protein (221aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSX5_CLOSA
pyridoxal phosphate enzyme, YggS family
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:AGX43695.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying items 1-30 of 277 in total

View Taxonomy