ggKbase home page

L2_021_251G1_scaffold_79

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_79_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

213..1577
DNA (1365bp) protein (455aa)
Transporter n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAC5_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Na+-dependent transporters of the SNF family
L2_021_251G1_scaffold_79_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1676..2473)
DNA (798bp) protein (266aa)
ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B705_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49291.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L2_021_251G1_scaffold_79_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2466..3233)
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B704_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49290.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L2_021_251G1_scaffold_79_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3392..4015
DNA (624bp) protein (208aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B702_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ68123.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_021_251G1_scaffold_79_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4115..5494
DNA (1380bp) protein (460aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B701_RUMGN
L2_021_251G1_scaffold_79_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5543..6628
DNA (1086bp) protein (362aa)
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAC0_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CCZ68121.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_79_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6653..7930
DNA (1278bp) protein (426aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TR11_9FIRM
L2_021_251G1_scaffold_79_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7927..8418
DNA (492bp) protein (164aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=3 Tax=Lachnospiraceae RepID=A7B6Z8_RUMGN
L2_021_251G1_scaffold_79_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8464..8802
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JVB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49283.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Na+/H+ antiporter
L2_021_251G1_scaffold_79_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8799..9854
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68118.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Na+/H+ antiporter
L2_021_251G1_scaffold_79_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9851..11416
DNA (1566bp) protein (522aa)
Threonine synthase {ECO:0000313|EMBL:EDN76258.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EDN76258.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L-threonine synthase (EC:4.2.3.1)
Threonine synthase n=3 Tax=Lachnospiraceae RepID=A7B6Z6_RUMGN
L2_021_251G1_scaffold_79_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11420..11779
DNA (360bp) protein (120aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6Z5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49281.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_021_251G1_scaffold_79_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11897..12676)
DNA (780bp) protein (260aa)
4Fe-4S binding domain protein n=4 Tax=Clostridiales RepID=A7B6Z4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49280.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits
L2_021_251G1_scaffold_79_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13143..14012
DNA (870bp) protein (290aa)
YihY family protein n=3 Tax=Lachnospiraceae RepID=A7B6Z2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16245.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted membrane protein
L2_021_251G1_scaffold_79_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14332..15351
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=4 Tax=Clostridiales RepID=A7B6Z1_RUMGN
L2_021_251G1_scaffold_79_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15381..17801
DNA (2421bp) protein (807aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UH19_9FIRM
L2_021_251G1_scaffold_79_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17832..18857
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAB2_9FIRM
L2_021_251G1_scaffold_79_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19275..20387
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TR04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68110.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
glycoside hydrolase
L2_021_251G1_scaffold_79_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20431..20793)
DNA (363bp) protein (121aa)
Nitrogen regulatory protein P-II n=4 Tax=Clostridiales RepID=A7B6Y7_RUMGN
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EGN49274.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
nitrogen regulatory protein P-II
L2_021_251G1_scaffold_79_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20810..22051)
DNA (1242bp) protein (414aa)
Ammonium transporter n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQR5_9FIRM
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ammonium transporter
L2_021_251G1_scaffold_79_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22357..23439
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UH18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68107.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
cobalamin (vitamin B12) biosynthesis protein CbiG
L2_021_251G1_scaffold_79_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23436..24209
DNA (774bp) protein (258aa)
precorrin-6x reductase (EC:1.3.1.54)
Precorrin-6x reductase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAA9_9FIRM
Precorrin-6x reductase {ECO:0000313|EMBL:CCZ68106.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_021_251G1_scaffold_79_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24257..24784
DNA (528bp) protein (176aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=3 Tax=Lachnospiraceae RepID=V8BP22_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49270.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_021_251G1_scaffold_79_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25152..25901
DNA (750bp) protein (250aa)
Cobalt transport protein CbiM n=2 Tax=Ruminococcus gnavus RepID=A7B6X9_RUMGN
Cobalt transport protein CbiM {ECO:0000256|HAMAP-Rule:MF_01462}; Energy-coupling factor transporter probable substrate-capture protein CbiM {ECO:0000256|HAMAP-Rule:MF_01462}; Flags: Precursor;; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
cobalamin biosynthesis protein CbiM
L2_021_251G1_scaffold_79_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25903..26217
DNA (315bp) protein (105aa)
Cobalt transport protein CbiN n=3 Tax=Lachnospiraceae RepID=A7B6X8_RUMGN
Cobalt transport protein CbiN {ECO:0000256|HAMAP-Rule:MF_00330}; Energy-coupling factor transporter probable substrate-capture protein CbiN {ECO:0000256|HAMAP-Rule:MF_00330}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
cobalt/cobalamin transport protein CbiN
L2_021_251G1_scaffold_79_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26204..26977
DNA (774bp) protein (258aa)
Cobalt ABC transporter, permease protein CbiQ n=2 Tax=Ruminococcus gnavus RepID=A7B6X7_RUMGN
Cobalt ABC transporter, permease CbiQ {ECO:0000313|EMBL:ETD16233.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
cobalt ABC transporter, permease protein CbiQ
L2_021_251G1_scaffold_79_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26974..27810
DNA (837bp) protein (279aa)
Cobalt ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=A7B6X6_RUMGN
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN76238.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
cobalt transport protein ATP-binding subunit
L2_021_251G1_scaffold_79_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27780..28607
DNA (828bp) protein (276aa)
Cobalt chelatase (CbiK) n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQZ6_9FIRM
Cobalt chelatase (CbiK) {ECO:0000313|EMBL:CCZ68100.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
anaerobic cobalt chelatase
L2_021_251G1_scaffold_79_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28604..29773
DNA (1170bp) protein (390aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Cobalamin biosynthesis protein CbiD n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BN47_RUMGN
cobalamin biosynthesis protein CbiD
L2_021_251G1_scaffold_79_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29770..30516
DNA (747bp) protein (249aa)
precorrin-2 C20-methyltransferase/cobalt-factor II C20-methyltransferase (EC:2.1.1.130 2.1.1.151)
Precorrin-2 C20-methyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQR0_9FIRM
Precorrin-2 C20-methyltransferase {ECO:0000313|EMBL:CCZ68098.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Displaying items 1-30 of 76 in total

View Taxonomy