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L2_021_251G1_scaffold_124

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_124_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1471
DNA (1470bp) protein (490aa)
TIGR02688 family protein n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEN0_9BIFI
Alkaline phosphatase domain-containing protein {ECO:0000313|EMBL:BAP83019.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
ATP-dependent Lon protease
L2_021_251G1_scaffold_124_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1486..2643
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9G0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50252.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_021_251G1_scaffold_124_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2816..3805)
DNA (990bp) protein (330aa)
Restriction endonuclease n=2 Tax=Bifidobacterium bifidum RepID=E4V9G1_BIFBI
Restriction endonuclease {ECO:0000313|EMBL:EFR50253.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
restriction endonuclease
L2_021_251G1_scaffold_124_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4026..4223
DNA (198bp) protein (66aa)
Gp2 phage-like protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MHZ0_BIFBI
Gp2 phage-like protein {ECO:0000313|EMBL:EKF16747.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_021_251G1_scaffold_124_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4485..5069)
DNA (585bp) protein (195aa)
RarD protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M420_BIFBI
RarD protein {ECO:0000313|EMBL:EKF16746.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
RarD protein
L2_021_251G1_scaffold_124_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5066..5302)
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2BW05_BIFBI
RarD Chloramphenicol-sensitive protein {ECO:0000313|EMBL:KFI42926.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_021_251G1_scaffold_124_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5409..6329)
DNA (921bp) protein (307aa)
Alpha/beta hydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHU5_BIFBI
alpha/beta hydrolase
Alpha/beta hydrolase {ECO:0000313|EMBL:EKF16744.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_251G1_scaffold_124_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6570..7670
DNA (1101bp) protein (367aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36)
tRNA (Adenine-N(1)-)-methyltransferase n=3 Tax=Bifidobacterium RepID=E4P1H8_BIFBP
Methyltransferase domain protein {ECO:0000313|EMBL:ERI82377.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98080.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_251G1_scaffold_124_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7790..8347
DNA (558bp) protein (186aa)
Phosphohistidine phosphatase SixA n=2 Tax=Bifidobacterium RepID=E4P1H9_BIFBP
sixA; phosphohistidine phosphatase
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:CDB23208.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_124_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8507..10813
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V9M8_BIFBI
metE; 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
L2_021_251G1_scaffold_124_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10956..11804
DNA (849bp) protein (283aa)
metF; 5, 10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Methylenetetrahydrofolate reductase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMK7_9BIFI
L2_021_251G1_scaffold_124_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11921..12253)
DNA (333bp) protein (111aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4V9N0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83029.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_251G1_scaffold_124_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12335..15433
DNA (3099bp) protein (1033aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glnE; glutamate-ammonia-ligase adenylyltransferase glnE (EC:2.7.7.42)
GlnE Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNS3_9BIFI
L2_021_251G1_scaffold_124_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15540..16535
DNA (996bp) protein (332aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Aspartate carbamoyltransferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM91_BIFBS
pyrB; aspartate carbamoyltransferase
L2_021_251G1_scaffold_124_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16535..16954
DNA (420bp) protein (140aa)
Aspartate carbamoyltransferase regulatory subunit 1 n=8 Tax=Bifidobacterium RepID=E3EM92_BIFBS
pyrI; aspartate carbamoyl transferase regulatory subunit
Aspartate carbamoyltransferase regulatory subunit 1 {ECO:0000313|EMBL:CDB22908.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_124_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17065..18489
DNA (1425bp) protein (475aa)
pyrC; dihydroorotase PyrC (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dihydroorotase n=2 Tax=Bifidobacterium bifidum RepID=E4P1P8_BIFBP
L2_021_251G1_scaffold_124_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18560..19525
DNA (966bp) protein (322aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ4_BIFBS
pyrF1; Orotidine 5'-phosphate decarboxylase
L2_021_251G1_scaffold_124_18
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19644..20474
DNA (831bp) protein (277aa)
Dihydroorotate dehydrogenase electron transfer subunit n=7 Tax=Bifidobacterium RepID=I3WHV6_BIFBI
pyrK; dihydroorotate dehydrogenase electron transfer subunit
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:CCY94938.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L2_021_251G1_scaffold_124_19
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20477..21424
DNA (948bp) protein (316aa)
pyrD; dihydroorotate dehydrogenase, catalytic subunit pyrD (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NWU4_BIFBP
L2_021_251G1_scaffold_124_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21446..22144
DNA (699bp) protein (233aa)
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Orotate phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4NWU5_BIFBP
L2_021_251G1_scaffold_124_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22253..22438
DNA (186bp) protein (62aa)
Transcriptional regulator, MerR family n=2 Tax=Bifidobacterium bifidum RepID=E4V9N9_BIFBI
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EFR50331.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
MerR family transcriptional regulator
L2_021_251G1_scaffold_124_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22508..23551
DNA (1044bp) protein (348aa)
adh; alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HTF5_BIFBI
Alcohol dehydrogenase {ECO:0000313|EMBL:EKE50693.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_021_251G1_scaffold_124_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23741..24817)
DNA (1077bp) protein (359aa)
permease n=1 Tax=Bifidobacterium bifidum RepID=UPI00035D3547
Uncharacterized protein {ECO:0000313|EMBL:BAQ98153.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_021_251G1_scaffold_124_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25496..25807
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V9P3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82942.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
serine/threonine protein kinase
L2_021_251G1_scaffold_124_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26089..28596
DNA (2508bp) protein (836aa)
UvrA Excinuclease ABC subunit A n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLJ0_9BIFI
UvrA Excinuclease ABC subunit A {ECO:0000313|EMBL:CDB22116.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
uvrA1; excinuclease ABC subunit A
L2_021_251G1_scaffold_124_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28670..30028
DNA (1359bp) protein (453aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=R6GCN9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98157.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Na+ driven multidrug efflux pump
L2_021_251G1_scaffold_124_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30184..30894
DNA (711bp) protein (237aa)
fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:AFL04480.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AFL04480.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHW7_BIFBI
L2_021_251G1_scaffold_124_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30897..31613
DNA (717bp) protein (239aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E4V9P7_BIFBI
L2_021_251G1_scaffold_124_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31660..32184
DNA (525bp) protein (175aa)
Transcriptional regulator, PadR family n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9P8_BIFBI
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EFR50340.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
PadR family transcriptional regulator
L2_021_251G1_scaffold_124_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32209..33186
DNA (978bp) protein (326aa)
Transporter, auxin efflux carrier family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFY9_BIFBI
putative integral membrane permease protein
Putative integral membrane permease protein {ECO:0000313|EMBL:CDB22111.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 52 in total

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