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L2_021_251G1_scaffold_172

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_172_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..778
DNA (777bp) protein (259aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate--tRNA ligase n=5 Tax=Bifidobacterium bifidum RepID=E3ELN8_BIFBS
gltX1; glutamyl-tRNA synthetase
L2_021_251G1_scaffold_172_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1020..1574)
DNA (555bp) protein (185aa)
ATPase (AAA+ superfamily)-like protein n=3 Tax=Bifidobacterium bifidum RepID=E4NYW2_BIFBP
ATPase AAA
ATPase (AAA superfamily)-like protein {ECO:0000313|EMBL:KFI42319.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_172_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1516..1908)
DNA (393bp) protein (131aa)
ATPase AAA n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H8B9_BIFBI
ATPase AAA {ECO:0000313|EMBL:EKE50216.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ATPase AAA
L2_021_251G1_scaffold_172_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2590..2790
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG60_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL03873.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_251G1_scaffold_172_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2869..4158
DNA (1290bp) protein (430aa)
Putative phosphohydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFX3_BIFBI
putative phosphohydrolase
Putative phosphohydrolase {ECO:0000313|EMBL:AFL03786.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_251G1_scaffold_172_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4301..5122)
DNA (822bp) protein (274aa)
HTH-type transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WFX4_BIFBI
HTH-type transcriptional regulator {ECO:0000313|EMBL:CDB23819.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
kipR; HTH-type transcriptional regulator
L2_021_251G1_scaffold_172_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5430..6833
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
3-isopropylmalate dehydratase large subunit n=7 Tax=Bifidobacterium bifidum RepID=E3ELP3_BIFBS
leuC; 3-isopropylmalate dehydratase large subunit
L2_021_251G1_scaffold_172_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6985..7677
DNA (693bp) protein (231aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELP4_BIFBS
leuD; 3-isopropylmalate dehydratase small subunit
L2_021_251G1_scaffold_172_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7836..11855
DNA (4020bp) protein (1340aa)
Helicase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELP5_BIFBS
helicase
Helicase {ECO:0000313|EMBL:ADO52440.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_251G1_scaffold_172_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11929..12309
DNA (381bp) protein (127aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V7I9_BIFBI
hypothetical protein
Putative cell surface protein {ECO:0000313|EMBL:BAQ97427.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_251G1_scaffold_172_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12903..13076
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7J1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49583.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_251G1_scaffold_172_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13205..14320
DNA (1116bp) protein (372aa)
Putative metal-dependent membrane protease n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GRD6_9BIFI
Putative metal-dependent membrane protease {ECO:0000313|EMBL:CDB23811.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
CAAX amino terminal protease
L2_021_251G1_scaffold_172_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14345..15598
DNA (1254bp) protein (418aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000313|EMBL:AFL03793.1}; EC=1.3.98.1 {ECO:0000313|EMBL:AFL03793.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFY0_BIFBI
L2_021_251G1_scaffold_172_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15877..17202
DNA (1326bp) protein (442aa)
murA; UDP-N-acetylglucosamine1-carboxyvinyl transferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=8 Tax=Bifidobacterium RepID=E3ELP9_BIFBS
L2_021_251G1_scaffold_172_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17299..18642)
DNA (1344bp) protein (448aa)
Macrolide-efflux protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYX3_BIFBP
macrolide-efflux protein
ABC transporter permease {ECO:0000313|EMBL:EKF15190.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_251G1_scaffold_172_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18865..19575)
DNA (711bp) protein (237aa)
Transcriptional regulator, TetR family n=3 Tax=Bifidobacterium RepID=E3ELQ1_BIFBS
TetR family transcriptional regulator
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDB23260.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_172_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19774..20697
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFY4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL03797.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_021_251G1_scaffold_172_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


21022..21453
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=8 Tax=Bifidobacterium RepID=E3ELQ3_BIFBS
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_021_251G1_scaffold_172_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


21468..22160
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=8 Tax=Bifidobacterium RepID=E3ELQ4_BIFBS
rlpA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_251G1_scaffold_172_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22413..23402)
DNA (990bp) protein (330aa)
fkbP; peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPR4_9BIFI
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_172_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23493..24566
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H860_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50146.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_021_251G1_scaffold_172_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24559..25572
DNA (1014bp) protein (338aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3WFY9_BIFBI
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CDB23254.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_021_251G1_scaffold_172_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25821..26807
DNA (987bp) protein (329aa)
Tetratricopeptide repeat protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DQM6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97440.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
thioredoxin-like protein
L2_021_251G1_scaffold_172_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26906..27595)
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CIM7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42338.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_172_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27767..27925
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MBU4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF14757.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_021_251G1_scaffold_172_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28031..29047)
DNA (1017bp) protein (339aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium bifidum RepID=E4NYY3_BIFBP
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:KFI42339.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_172_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29239..29379
DNA (141bp) protein (47aa)
Mandelate racemase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYY4_BIFBP
mandelate racemase
Truncated mandelate racemase {ECO:0000313|EMBL:BAQ97443.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_251G1_scaffold_172_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29630..30004
DNA (375bp) protein (125aa)
Mandelate racemase n=2 Tax=Bifidobacterium bifidum RepID=E4NYY5_BIFBP
mandelate racemase
Truncated mandelate racemase {ECO:0000313|EMBL:BAQ97444.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI83916.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_251G1_scaffold_172_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30067..30930
DNA (864bp) protein (288aa)
Short chain dehydrogenase {ECO:0000313|EMBL:KFI42340.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KFI42340.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Short chain dehydrogenase n=4 Tax=Bifidobacterium bifidum RepID=E4NYY6_BIFBP
3-oxoacyl-ACP reductase
L2_021_251G1_scaffold_172_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30882..31385
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIN0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42341.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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