ggKbase home page

L2_021_251G1_scaffold_349

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_349_1
Bifidobacterium ruminantium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..421)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3ASD9_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KFI90146.1}; TaxID=78346 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium ruminantium.;"
colicin transporter
L2_021_251G1_scaffold_349_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(967..1215)
DNA (249bp) protein (83aa)
Glutaredoxin-like protein n=3 Tax=Bifidobacterium bifidum RepID=E3ELK8_BIFBS
grxC; glutaredoxin
Glutaredoxin-like protein {ECO:0000313|EMBL:ADO52403.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_021_251G1_scaffold_349_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1337..2323)
DNA (987bp) protein (329aa)
ribonuclease BN n=1 Tax=Bifidobacterium bifidum RepID=UPI00036576F1
Ribonuclease BN-like family protein {ECO:0000313|EMBL:EKF16310.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ribonuclease BN-like family
L2_021_251G1_scaffold_349_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2345..2884
DNA (540bp) protein (180aa)
thioredoxin peroxidase (EC:1.11.1.15)
Thioredoxin-dependent thiol peroxidase n=6 Tax=Bifidobacterium bifidum RepID=E3ELK6_BIFBS
Putative peroxiredoxin bcp {ECO:0000313|EMBL:EFR49535.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_251G1_scaffold_349_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2959..3213)
DNA (255bp) protein (85aa)
ABC transporter related protein n=4 Tax=Bifidobacterium bifidum RepID=E4NYJ3_BIFBP
ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:ERI84113.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_021_251G1_scaffold_349_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3379..4020
DNA (642bp) protein (214aa)
upp; uracil phosphoribosyl transferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Uracil phosphoribosyltransferase n=6 Tax=Bifidobacterium bifidum RepID=E3ELK4_BIFBS
L2_021_251G1_scaffold_349_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4255..4734
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA large subunit methyltransferase H n=6 Tax=Bifidobacterium RepID=E4NYJ1_BIFBP
hypothetical protein
L2_021_251G1_scaffold_349_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4751..8170)
DNA (3420bp) protein (1140aa)
Permease protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCG7_9BIFI
Permease protein of ABC transporter system {ECO:0000313|EMBL:CDB22005.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ABC transporter permease
L2_021_251G1_scaffold_349_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8179..8880)
DNA (702bp) protein (234aa)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium bifidum RepID=E3ELK1_BIFBS
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR49530.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_251G1_scaffold_349_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9018..9587
DNA (570bp) protein (190aa)
Putative HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H759_BIFBI
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EKE49816.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
yxbF; putative HTH-type transcriptional regulator
L2_021_251G1_scaffold_349_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10152..10331
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7C1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49528.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_021_251G1_scaffold_349_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10328..11824
DNA (1497bp) protein (499aa)
Amino acid permease n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELJ9_BIFBS
Amino acid permease {ECO:0000313|EMBL:EKE49817.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
aap1; amino acid permease
L2_021_251G1_scaffold_349_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12121..16005
DNA (3885bp) protein (1295aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ebgA; evolved beta-galactosidase subunit alpha (EC:3.2.1.23)
Beta-galactosidase P1 n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LFS9_BIFBI
L2_021_251G1_scaffold_349_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16378..17367
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WFS7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42265.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_021_251G1_scaffold_349_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17804..18475)
DNA (672bp) protein (224aa)
ilvC; ketol-acid reductoisomerase/2-dehydropantoate 2-reductase IlvC (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Ketol-acid reductoisomerase n=2 Tax=Bifidobacterium bifidum RepID=E3ELJ6_BIFBS
L2_021_251G1_scaffold_349_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18435..18776)
DNA (342bp) protein (114aa)
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000313|EMBL:EKE49755.1}; EC=1.1.1.86 {ECO:0000313|EMBL:EKE49755.1};; Flags: Fragment;; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Ketol-acid reductoisomerase n=4 Tax=Bifidobacterium RepID=E4V7B6_BIFBI
L2_021_251G1_scaffold_349_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19196..19888)
DNA (693bp) protein (231aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Ketol-acid reductoisomerase n=7 Tax=Bifidobacterium bifidum RepID=E3ELJ5_BIFBS
ilvC1; ketol-acid reductoisomerase
Displaying 17 items

View Taxonomy