ggKbase home page

L2_021_251G1_scaffold_459

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_251G1_scaffold_459_1
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..262
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88780.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L2_021_251G1_scaffold_459_2
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(276..629)
DNA (354bp) protein (118aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPI5_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM88781.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Helix-turn-helix.
L2_021_251G1_scaffold_459_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1225..1644
DNA (420bp) protein (140aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=3 Tax=Clostridiales RepID=D7GQX3_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Putative RNA polymerase sigma factor Tn916-like, CTn6-Orf5 {ECO:0000313|EMBL:CCK98977.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_021_251G1_scaffold_459_4
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1641..1880
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KH44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33213.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
conjugative transposon protein
L2_021_251G1_scaffold_459_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2420..2620
DNA (201bp) protein (67aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RNX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP18187.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
DNA binding domain, excisionase family
L2_021_251G1_scaffold_459_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2640..4100
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RNX3_9FIRM
Site-specific recombinase {ECO:0000313|EMBL:ENZ19578.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Phage integrase family.
L2_021_251G1_scaffold_459_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4819..5694)
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22359.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_021_251G1_scaffold_459_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5710..6987)
DNA (1278bp) protein (426aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EEA81775.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EEA81775.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=2 Tax=Clostridium RepID=B6FQE7_9CLOT
L2_021_251G1_scaffold_459_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7007..7543)
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22357.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_021_251G1_scaffold_459_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7567..8469)
DNA (903bp) protein (301aa)
ParB-like protein n=2 Tax=Clostridium RepID=B6FQE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22356.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ParB-like partition proteins
L2_021_251G1_scaffold_459_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8469..9236)
DNA (768bp) protein (256aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Clostridium RepID=B6FQF0_9CLOT
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EEA81778.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPases involved in chromosome partitioning
L2_021_251G1_scaffold_459_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9452..10408
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22354.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alpha/beta fold family hydrolase
L2_021_251G1_scaffold_459_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10456..11169)
DNA (714bp) protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Clostridium RepID=B6FQF2_9CLOT
L2_021_251G1_scaffold_459_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11176..13122)
DNA (1947bp) protein (649aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=2 Tax=Clostridium RepID=B6FQF3_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glucose-inhibited division protein A
L2_021_251G1_scaffold_459_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13088..14461)
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQF4_9CLOT
tRNA modification GTPase trmE
L2_021_251G1_scaffold_459_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14680..15345)
DNA (666bp) protein (222aa)
R3H domain protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FVU0_9CLOT
R3H domain protein {ECO:0000313|EMBL:EEA79851.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted RNA-binding protein
L2_021_251G1_scaffold_459_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15400..16644)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22349.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L2_021_251G1_scaffold_459_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16669..16881)
DNA (213bp) protein (71aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Clostridium RepID=B6FQF7_9CLOT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00278
L2_021_251G1_scaffold_459_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16885..17235)
DNA (351bp) protein (117aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribonuclease P protein component n=2 Tax=Clostridium RepID=B6FQF8_9CLOT
ribonuclease P
L2_021_251G1_scaffold_459_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17285..17419)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=5 Tax=Firmicutes RepID=B5CNF8_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
LSU ribosomal protein L34P
L2_021_251G1_scaffold_459_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17489..17674)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22345.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Displaying 21 items

View Taxonomy