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L2_022_000G1_scaffold_82

Search features with annotation key words

Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000G1_scaffold_82_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(565..708)
DNA (144bp) protein (48aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=T3G9T2_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62882.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_82_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(774..1136)
DNA (363bp) protein (121aa)
Uncharacterized protein n=115 Tax=Clostridium difficile RepID=T3G8N3_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31097.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_82_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1194..1487)
DNA (294bp) protein (98aa)
Preprotein translocase, YajC subunit n=214 Tax=Clostridium difficile RepID=C9XPA6_CLODC
putative protein translocase subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EHJ33222.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_82_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1621..2742)
DNA (1122bp) protein (374aa)
tgt; Queuine tRNA-ribosyltransferase (tRNA-guaninetransglycosylase) (Guanine insertion enzyme) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Queuine tRNA-ribosyltransferase n=186 Tax=Clostridium difficile RepID=T3GDW5_CLODC
L2_022_000G1_scaffold_82_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2821..3306)
DNA (486bp) protein (162aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=G6B4N2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31100.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_82_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3318..4343)
DNA (1026bp) protein (342aa)
queA; S-adenosylmethionine:tRNAribosyltransferase-isom erase (Queuosine biosynthesisprotein QueA) (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000255|HAMAP-Rule:MF_00113}; EC=2.4.99.17 {ECO:0000255|HAMAP-Rule:MF_00113};; Queuosine biosynthesis protein QueA {ECO:0000255|HAMAP-Rule:MF_00113}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=6 Tax=Clostridium difficile RepID=QUEA_CLOD6
L2_022_000G1_scaffold_82_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4661..5680)
DNA (1020bp) protein (340aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Holliday junction ATP-dependent DNA helicase RuvB n=203 Tax=Clostridium difficile RepID=RUVB_CLOD6
L2_022_000G1_scaffold_82_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5787..6389)
DNA (603bp) protein (201aa)
ruvA; Holliday junction ATP-dependent DNA helicaseRuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Holliday junction ATP-dependent DNA helicase RuvA n=194 Tax=Clostridium difficile RepID=T3GDX6_CLODC
L2_022_000G1_scaffold_82_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6382..6891)
DNA (510bp) protein (170aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Crossover junction endodeoxyribonuclease RuvC n=84 Tax=Clostridium difficile RepID=RUVC_CLOD6
L2_022_000G1_scaffold_82_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7203..7832)
DNA (630bp) protein (210aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=T3GD12_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH87907.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88534.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_82_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8035..8358
DNA (324bp) protein (108aa)
Uncharacterized protein n=126 Tax=Clostridium difficile RepID=C9XPB4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK99303.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_022_000G1_scaffold_82_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8626..9480
DNA (855bp) protein (285aa)
Uncharacterized protein n=138 Tax=Clostridium difficile RepID=G6BTD6_CLODI
hypothetical protein
Predicted membrane protein {ECO:0000313|EMBL:CKH87960.1}; Putative membrane protein {ECO:0000313|EMBL:CDS89157.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_82_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9666..11102)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3GDT1_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69699.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_82_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11173..12555)
DNA (1383bp) protein (461aa)
H+ symporter family protein n=130 Tax=Clostridium difficile RepID=T3GBC4_CLODC
Gluconate permease {ECO:0000313|EMBL:CKH88013.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
gluconate permease
L2_022_000G1_scaffold_82_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12691..13581)
DNA (891bp) protein (297aa)
garR; Tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase {ECO:0000313|EMBL:CAJ69701.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CAJ69701.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
2-hydroxy-3-oxopropionate reductase n=30 Tax=Clostridium difficile RepID=T3G9Q0_CLODC
L2_022_000G1_scaffold_82_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13992..14663
DNA (672bp) protein (224aa)
Bacterial regulatory s, gntR family protein n=106 Tax=Clostridium difficile RepID=T3G8K4_CLODC
Transcriptional regulator, GntR family
GntR family transcriptional regulator {ECO:0000313|EMBL:CKH88071.1}; Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDS88545.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_82_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14775..15314
DNA (540bp) protein (180aa)
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein n=171 Tax=Clostridium difficile RepID=T3G8J4_CLODC
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein {ECO:0000313|EMBL:EQE60172.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L2_022_000G1_scaffold_82_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15576..15884
DNA (309bp) protein (103aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=C9XPC1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33238.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_82_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16046..17836)
DNA (1791bp) protein (597aa)
ABC transporter ATP-binding protein/permease {ECO:0000313|EMBL:CKH88142.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH88142.1};; ABC-type transport system, multidrug-family ATP-binding/permease protein {ECO:0000313|EMBL:CDS95358.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDS95358.1};; ABC-type transport system, multidrug-familyATP-binding/permease protein {ECO:0000313|EMBL:CEJ99446.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEJ99446.1};; Uncharacterized protein {ECO:0000313|EMBL:CDS89166.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=198 Tax=Clostridium difficile RepID=C9XPC2_CLODC
ABC transporter ATP-binding protein/permease
L2_022_000G1_scaffold_82_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17836..19563)
DNA (1728bp) protein (576aa)
multidrug family ABC transporter ATP-binding/permease (EC:3.6.3.-)
ABC transporter family protein n=164 Tax=Clostridium difficile RepID=T3G8G8_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQE60196.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_82_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19808..19975)
DNA (168bp) protein (56aa)
Dihydrofolate reductase family protein n=1 Tax=Clostridium difficile E10 RepID=U3VAJ8_CLODI
conserved hypothetical protein
Dihydrofolate reductase family protein {ECO:0000313|EMBL:CCK88219.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L2_022_000G1_scaffold_82_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20363..21475
DNA (1113bp) protein (371aa)
Putative amino acid racemase n=5 Tax=Clostridium difficile RepID=Q183Q8_CLOD6
putative amino acid racemase
Putative amino acid racemase {ECO:0000313|EMBL:CAJ69707.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_82_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21839..22345)
DNA (507bp) protein (169aa)
Nucleoside recognition family protein n=5 Tax=Clostridium difficile RepID=T2TXY6_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CEJ99450.1}; Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:CKH88236.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_82_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22347..22994)
DNA (648bp) protein (216aa)
Nucleoside recognition family protein n=212 Tax=Clostridium difficile RepID=C9XPC7_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31121.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_82_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23008..24180)
DNA (1173bp) protein (391aa)
putative glutamate carboxypeptidase, M20 family (EC:3.4.17.11)
Peptidase {ECO:0000313|EMBL:CKH88305.1}; EC=3.4.17.11 {ECO:0000313|EMBL:CKH88305.1};; Putative glutamate carboxypeptidase, M20 family {ECO:0000313|EMBL:CEJ99452.1}; EC=3.4.17.11 {ECO:0000313|EMBL:CEJ99452.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Peptidase M20/M25/M40 family protein n=6 Tax=Clostridium difficile RepID=T3GDN7_CLODC
L2_022_000G1_scaffold_82_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24448..25824
DNA (1377bp) protein (459aa)
Uncharacterized protein n=83 Tax=Clostridium difficile RepID=T3GB80_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69711.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_82_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26074..26409)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI000369114E
Putative membrane protein {ECO:0000313|EMBL:CCL23197.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L2_022_000G1_scaffold_82_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26760..27290)
DNA (531bp) protein (177aa)
Flavodoxin domain protein n=60 Tax=Clostridium difficile RepID=T3GDM2_CLODC
putative flavodoxin
Putative flavodoxin {ECO:0000313|EMBL:CAJ69713.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_82_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27366..28460)
DNA (1095bp) protein (365aa)
Oxidoreductase (FAD-binding domain) {ECO:0000313|EMBL:CKH88389.1}; EC=1.-.-.- {ECO:0000313|EMBL:CKH88389.1};; Putative oxidoreductase (Fad-binding domain) {ECO:0000313|EMBL:CEJ99456.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Flavin oxidoreductase / NADH oxidase family protein n=6 Tax=Clostridium difficile RepID=T3GB66_CLODC
putative oxidoreductase (fad-binding domain)
L2_022_000G1_scaffold_82_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28462..28908)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=99 Tax=Clostridium difficile RepID=Q183R5_CLOD6
Transcriptional regulator, MarR family
MarR family protein {ECO:0000313|EMBL:EQE60180.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Displaying items 1-30 of 136 in total

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