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L2_022_000G1_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000G1_scaffold_85_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(92..1891)
DNA (1800bp) protein (600aa)
bglF1; Group I intron (EC:2.7.1.69)
PTS system, beta-glucoside-specific IIABC component family protein {ECO:0000313|EMBL:EQE68612.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQE68612.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
PTS system, beta-glucoside-specific IIABC component family protein n=60 Tax=Clostridium difficile RepID=T2UYS1_CLODI
L2_022_000G1_scaffold_85_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2227..3414
DNA (1188bp) protein (396aa)
Transporter, Major Facilitator Superfamily (MFS) n=50 Tax=Clostridium difficile RepID=Q18A12_CLOD6
Transporter, Major Facilitator Superfamily(MFS)
Transporter {ECO:0000313|EMBL:CKH57695.1}; Transporter, Major Facilitator Superfamily(MFS) {ECO:0000313|EMBL:CEJ97362.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_85_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3440..4132
DNA (693bp) protein (231aa)
Bacterial regulatory s, gntR family protein n=114 Tax=Clostridium difficile RepID=T3I8R9_CLODC
Transcriptional regulator, GntR family
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EQG78290.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_85_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4349..4651)
DNA (303bp) protein (101aa)
PTS system, Fructose specific IIB subunit n=215 Tax=Clostridium difficile RepID=G6B723_CLODI
PTS system, IIb component
Putative PTS system, IIB component {ECO:0000313|EMBL:CCL32913.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_85_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4673..5083)
DNA (411bp) protein (137aa)
Universal stress family protein n=220 Tax=Clostridium difficile RepID=D5Q140_CLODI
universal stress protein
Putative universal stress protein A (UspA) {ECO:0000313|EMBL:CCL00709.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_022_000G1_scaffold_85_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5260..7188)
DNA (1929bp) protein (643aa)
Diguanylate cyclase domain protein n=87 Tax=Clostridium difficile RepID=T3I4X7_CLODC
Putative signaling protein {ECO:0000313|EMBL:CAJ67645.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
putative signaling protein
L2_022_000G1_scaffold_85_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7364..7894)
DNA (531bp) protein (177aa)
Flavodoxin n=2 Tax=Clostridium difficile RepID=G6BV77_CLODI
floX; flavodoxin
Flavodoxin {ECO:0000313|EMBL:EHJ31165.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_85_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7988..8998)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=T3I9X2_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE68623.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_85_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9486..9830
DNA (345bp) protein (115aa)
Uncharacterized protein n=208 Tax=Clostridium difficile RepID=C9XM38_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CEJ97354.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS84695.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_85_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10162..11538)
DNA (1377bp) protein (459aa)
Sensory box protein n=158 Tax=Clostridium difficile RepID=T3I710_CLODC
Transcriptional regulator, sigma-54-dependent
Sensory box protein {ECO:0000313|EMBL:EQE68650.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_85_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11637..12656)
DNA (1020bp) protein (340aa)
Electron transfer flavoFAD-binding domain protein n=183 Tax=Clostridium difficile RepID=T3IA84_CLODC
etfA; electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:CKH57992.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_85_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12670..13464)
DNA (795bp) protein (265aa)
Electron transfer flavodomain protein n=198 Tax=Clostridium difficile RepID=T3I948_CLODC
etfB; electron transfer flavoprotein subunit beta
Electron transfer flavodomain protein {ECO:0000313|EMBL:EQG78327.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_85_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13475..14617)
DNA (1143bp) protein (381aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase, N-terminal domain protein n=186 Tax=Clostridium difficile RepID=T3I458_CLODC
Acyl-CoA dehydrogenase, N-terminal domain protein {ECO:0000313|EMBL:EQE68599.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_85_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14657..15889)
DNA (1233bp) protein (411aa)
CoA-transferase III family protein n=84 Tax=Clostridium difficile RepID=C9XM33_CLODC
CoA-transferase
Putative 3-methyl-2-oxobutanoate dehydrogenase {ECO:0000313|EMBL:EHJ31172.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_85_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16026..17366)
DNA (1341bp) protein (447aa)
Citrate transporter family protein n=190 Tax=Clostridium difficile RepID=C9XM32_CLODC
permease
Putative permease, divalent anion symporter family {ECO:0000313|EMBL:CCL32901.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_85_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17461..18276)
DNA (816bp) protein (272aa)
3-hydroxybutyryl-CoA dehydratase (Crotonase) n=96 Tax=Clostridium difficile RepID=C9XM31_CLODC
crt1; 3-hydroxybutyryl-CoA dehydratase
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:EHJ31174.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_85_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18884..20077)
DNA (1194bp) protein (398aa)
CoA-transferase III family protein n=141 Tax=Clostridium difficile RepID=T3I943_CLODC
beta-alanine CoA-transferase
CoA-transferase III family protein {ECO:0000313|EMBL:EQE68629.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_85_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20153..21508)
DNA (1356bp) protein (452aa)
Citrate transporter family protein n=4 Tax=Clostridium difficile RepID=T4AZC8_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE02734.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_022_000G1_scaffold_85_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21553..22449)
DNA (897bp) protein (299aa)
Putative hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:CKH58324.1}; EC=4.1.3.4 {ECO:0000313|EMBL:CKH58324.1};; Putative pyruvate carboxyltransferase {ECO:0000313|EMBL:CEJ97344.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Hydroxymethylglutaryl-CoA lyase yngG n=87 Tax=Clostridium difficile RepID=T3I585_CLODC
putative pyruvate carboxyltransferase
L2_022_000G1_scaffold_85_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22715..23719
DNA (1005bp) protein (335aa)
LacI-family transcriptional regulator n=183 Tax=Clostridium difficile RepID=C9XM27_CLODC
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:CKH58356.1}; Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDS84231.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_85_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23886..24605)
DNA (720bp) protein (240aa)
Probable transcriptional regulatory protein CD630_07950 n=207 Tax=Clostridium difficile RepID=Y795_CLOD6
hypothetical protein
Probable transcriptional regulatory protein CDR20291_0726 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_022_000G1_scaffold_85_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24688..25443)
DNA (756bp) protein (252aa)
nadE; NH3-dependent NAD(+) synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
NH(3)-dependent NAD(+) synthetase n=201 Tax=Clostridium difficile RepID=T3I927_CLODC
L2_022_000G1_scaffold_85_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25622..26008
DNA (387bp) protein (129aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=G6B738_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ31177.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_85_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26008..26385
DNA (378bp) protein (126aa)
Uncharacterized protein n=189 Tax=Clostridium difficile RepID=G6BV60_CLODI
hypothetical protein
Putative membrane protein, DUF81 family {ECO:0000313|EMBL:CDT44302.1}; Putative permease {ECO:0000313|EMBL:CKH58488.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS84675.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_85_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26471..27139)
DNA (669bp) protein (223aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T3EGU2_CLODI
YigZ family protein {ECO:0000313|EMBL:EHJ31179.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L2_022_000G1_scaffold_85_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27420..27863)
DNA (444bp) protein (148aa)
NUDIX domain protein n=207 Tax=Clostridium difficile RepID=T3I485_CLODC
putative hydrolase, NUDIX family
NUDIX domain protein {ECO:0000313|EMBL:EQG78370.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_85_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27949..28626)
DNA (678bp) protein (226aa)
HEAT repeats family protein n=160 Tax=Clostridium difficile RepID=T3I5B8_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL20906.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_022_000G1_scaffold_85_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28634..29917)
DNA (1284bp) protein (428aa)
GTPase HflX n=129 Tax=Clostridium difficile RepID=T3I730_CLODC
GTP-binding protein, HflX type
Putative GTP-binding protein, HflX type {ECO:0000313|EMBL:CAJ67622.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_85_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30134..30394
DNA (261bp) protein (87aa)
Cysteine-rich small domain protein n=137 Tax=Clostridium difficile RepID=T3IAA9_CLODC
metal-binding protein
Cysteine-rich small domain protein {ECO:0000313|EMBL:EQI88889.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_022_000G1_scaffold_85_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30536..31183)
DNA (648bp) protein (216aa)
Uncharacterized protein n=120 Tax=Clostridium difficile RepID=T3I970_CLODC
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ67620.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Displaying items 1-30 of 129 in total

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