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L2_022_000G1_scaffold_175

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000G1_scaffold_175_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..576)
DNA (576bp) protein (192aa)
Cell surface protein {ECO:0000313|EMBL:CKG97863.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKG97863.1};; Cwp26 {ECO:0000313|EMBL:AFV73908.1}; Putative cell surface protein cwp26 {ECO:0000313|EMBL:CEJ97804.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cwp26 n=28 Tax=Clostridium difficile RepID=L7PGY0_CLODI
cwp26; putative cell surface protein cwp26
L2_022_000G1_scaffold_175_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

767..1588
DNA (822bp) protein (274aa)
TPR repeat family protein n=90 Tax=Clostridium difficile RepID=T3HWG6_CLODC
lipoprotein
Lipoprotein {ECO:0000313|EMBL:CKG97840.1}; Putative lipoprotein {ECO:0000313|EMBL:CEJ97803.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_175_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1713..3230
DNA (1518bp) protein (506aa)
Resolvase, N terminal domain protein n=35 Tax=Clostridium difficile RepID=T3HRJ0_CLODC
putative site-specific recombinase
Putative site-specific recombinase {ECO:0000313|EMBL:CDS85992.1}; Site-specific recombinase {ECO:0000313|EMBL:CKG97810.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_175_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3253..3537
DNA (285bp) protein (95aa)
RNA polymerase sigma factor n=141 Tax=Clostridium difficile RepID=T3HSU8_CLODC
FliA/WhiG family RNA polymerase sigma 28 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
L2_022_000G1_scaffold_175_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3634..5298)
DNA (1665bp) protein (555aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Putative peptidoglycan glycosyltransferase {ECO:0000313|EMBL:CAJ68083.1}; EC=2.4.1.129 {ECO:0000313|EMBL:CAJ68083.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Penicillin binding transpeptidase domain protein n=101 Tax=Clostridium difficile RepID=C9XNV6_CLODC
L2_022_000G1_scaffold_175_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5370..6617)
DNA (1248bp) protein (416aa)
Peptidase U32 family protein n=172 Tax=Clostridium difficile RepID=T3HXD8_CLODC
putative peptidase, U32 family
Peptidase U32 family protein {ECO:0000313|EMBL:EQI86918.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_022_000G1_scaffold_175_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6604..7278)
DNA (675bp) protein (225aa)
putative O-methyltransferase (EC:2.1.1.-)
Mycolic acid cyclopropane synthetase family protein n=177 Tax=Clostridium difficile RepID=T3HWG2_CLODC
Mycolic acid cyclopropane synthetase family protein {ECO:0000313|EMBL:EQG77646.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_175_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7450..8529)
DNA (1080bp) protein (360aa)
YceG family protein n=141 Tax=Clostridium difficile RepID=G6BW53_CLODI
exported aminodeoxychorismate lyase
Putative aminodeoxychorismate lyase {ECO:0000313|EMBL:CAJ68080.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_175_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8742..10067)
DNA (1326bp) protein (442aa)
pdp; Pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EQG77439.1}; EC=2.4.2.2 {ECO:0000313|EMBL:EQG77439.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Pyrimidine-nucleoside phosphorylase n=168 Tax=Clostridium difficile RepID=Q18B84_CLOD6
L2_022_000G1_scaffold_175_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10271..11083)
DNA (813bp) protein (271aa)
pupG; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase {ECO:0000313|EMBL:CAJ68078.1}; EC=2.4.2.1 {ECO:0000313|EMBL:CAJ68078.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Purine nucleoside phosphorylase n=5 Tax=Clostridium difficile RepID=T3HV78_CLODC
L2_022_000G1_scaffold_175_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11130..12302)
DNA (1173bp) protein (391aa)
drm; Phosphopentomutase (Phosphodeoxyribomutase) (EC:5.4.2.7)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Phosphopentomutase n=39 Tax=Clostridium difficile RepID=DEOB_CLOD6
L2_022_000G1_scaffold_175_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12344..13258)
DNA (915bp) protein (305aa)
Phage integrase family protein n=151 Tax=Clostridium difficile RepID=C9XNU9_CLODC
tyrosine recombinase
Phage integrase family protein {ECO:0000313|EMBL:EQG77545.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_175_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13270..13803)
DNA (534bp) protein (178aa)
Uncharacterized protein n=126 Tax=Clostridium difficile RepID=T2U2N5_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCL21329.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_022_000G1_scaffold_175_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13943..14479)
DNA (537bp) protein (179aa)
ADP-ribose pyrophosphatase n=211 Tax=Clostridium difficile RepID=C9XNU7_CLODC
ADP-ribose pyrophosphatase
Hydrolase, NUDIX family {ECO:0000313|EMBL:EHJ30568.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_175_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14481..15548)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=112 Tax=Clostridium difficile RepID=T3HX75_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21327.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_022_000G1_scaffold_175_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15553..16377)
DNA (825bp) protein (275aa)
Glycosyl transferase 4 family protein n=172 Tax=Clostridium difficile RepID=C9XNU5_CLODC
glycosyltransferase
Glycosyl transferase 4 family protein {ECO:0000313|EMBL:EQE67514.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_175_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16385..17077)
DNA (693bp) protein (231aa)
Glycosyl transferase 2 family protein n=187 Tax=Clostridium difficile RepID=C9XNU4_CLODC
glycosyltransferase
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:EQE67522.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_175_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17101..17976)
DNA (876bp) protein (292aa)
Uncharacterized protein n=78 Tax=Clostridium difficile RepID=T3HVD3_CLODC
conserved hypothetical protein
Protein of uncharacterised function (DUF3186) {ECO:0000313|EMBL:CKG97325.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85960.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_175_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17994..19115)
DNA (1122bp) protein (374aa)
Thiamin pyrophosphokinase, catalytic domain protein n=212 Tax=Clostridium difficile RepID=T2TM71_CLODI
pyrophosphokinase
Thiamin pyrophosphokinase, catalytic domain protein {ECO:0000313|EMBL:EQI87111.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_022_000G1_scaffold_175_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19528..20352)
DNA (825bp) protein (275aa)
Stage 0 sporulation protein A n=122 Tax=Clostridium difficile RepID=C9XNU1_CLODC
spo0A; stage 0 sporulation protein A
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L2_022_000G1_scaffold_175_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20494..21552)
DNA (1059bp) protein (353aa)
spoIVB; Stage IV sporulation protein B, peptidase S55family (EC:3.4.21.116)
Stage IV sporulation protein B {ECO:0000313|EMBL:CKG97194.1}; EC=3.4.21.116 {ECO:0000313|EMBL:CKG97194.1};; Stage IV sporulation protein B, peptidase S55 family {ECO:0000313|EMBL:CDT47668.1}; EC=3.4.21.116 {ECO:0000313|EMBL:CDT47668.1};; Stage IV sporulation protein B, peptidase S55family {ECO:0000313|EMBL:CEJ97784.1}; EC=3.4.21.116 {ECO:0000313|EMBL:CEJ97784.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PDZ domain protein n=124 Tax=Clostridium difficile RepID=T3HSC5_CLODC
L2_022_000G1_scaffold_175_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21695..22153
DNA (459bp) protein (153aa)
Spermine/spermidine acetyltransferase n=5 Tax=Clostridium difficile RepID=T2YFL8_CLODI
Putative diamine N-acetyltransferase {ECO:0000313|EMBL:EHJ26122.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
bltD; spermine/spermidine acetyltransferase
L2_022_000G1_scaffold_175_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22214..22705
DNA (492bp) protein (164aa)
Acetyltransferase family protein n=183 Tax=Clostridium difficile RepID=T3HVC8_CLODC
Acetyltransferase family protein {ECO:0000313|EMBL:EQI87107.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
putative N-acetyltransferase
L2_022_000G1_scaffold_175_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22798..23664)
DNA (867bp) protein (289aa)
Uncharacterized protein n=57 Tax=Clostridium difficile RepID=T3HY85_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG97110.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ97781.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_175_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23878..25557)
DNA (1680bp) protein (560aa)
DNA repair protein RecN n=73 Tax=Clostridium difficile RepID=Q18B72_CLOD6
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
recN; DNA repair protein RecN (Recombination proteinN)
L2_022_000G1_scaffold_175_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25577..26389)
DNA (813bp) protein (271aa)
Ribosomal RNA large subunit methyltransferase J n=178 Tax=Clostridium difficile RepID=G6BW35_CLODI
putative RNA-binding S4-domain protein
Hemolysin TlyA family protein {ECO:0000313|EMBL:EQI87104.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_022_000G1_scaffold_175_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26522..28387)
DNA (1866bp) protein (622aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
1-deoxy-D-xylulose-5-phosphate synthase n=7 Tax=Clostridium difficile RepID=DXS_CLOD6
L2_022_000G1_scaffold_175_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28421..28858)
DNA (438bp) protein (146aa)
Divergent PAP2 family protein n=206 Tax=Clostridium difficile RepID=G6B7U9_CLODI
hypothetical protein
Divergent PAP2 family protein {ECO:0000313|EMBL:EQG77599.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_175_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28888..29775)
DNA (888bp) protein (296aa)
Geranyltranstransferase {ECO:0000313|EMBL:CAJ68059.1}; EC=2.5.1.10 {ECO:0000313|EMBL:CAJ68059.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Geranyltranstransferase n=174 Tax=Clostridium difficile RepID=C9XNT2_CLODC
ispA; geranyltranstransferase
L2_022_000G1_scaffold_175_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29778..29993)
DNA (216bp) protein (72aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Exodeoxyribonuclease 7 small subunit n=214 Tax=Clostridium difficile RepID=C9XNT1_CLODC
exodeoxyribonuclease VII small subunit
Displaying items 1-30 of 109 in total

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