ggKbase home page

L2_022_000G1_scaffold_236

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000G1_scaffold_236_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..908
DNA (906bp) protein (302aa)
Cell surface protein {ECO:0000313|EMBL:CKG97863.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKG97863.1};; Cwp26 {ECO:0000313|EMBL:AFV73908.1}; Putative cell surface protein cwp26 {ECO:0000313|EMBL:CEJ97804.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Peptidase propeptide and YPEB domain protein n=1 Tax=Clostridium difficile DA00154 RepID=T3Q689_CLODI
cwp26; putative cell surface protein cwp26
L2_022_000G1_scaffold_236_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2944..3054)
DNA (111bp) protein (37aa)
Helix-turn-helix family protein n=2 Tax=Clostridium difficile RepID=T4AUT3_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQE67519.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_236_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3733..3888
DNA (156bp) protein (52aa)
Uncharacterized protein n=52 Tax=Clostridium difficile RepID=T3HUA4_CLODC
putative phage regulator
Phage anti-repressor {ECO:0000313|EMBL:CKG97890.1}; Putative phage regulator {ECO:0000313|EMBL:CEJ97807.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4134..4385
DNA (252bp) protein (84aa)
Uncharacterized protein n=124 Tax=Clostridium difficile RepID=C9XNW2_CLODC
hypothetical protein
Putative phage protein {ECO:0000313|EMBL:CCK93387.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L2_022_000G1_scaffold_236_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4706..4819
DNA (114bp) protein (38aa)
Uncharacterized protein n=85 Tax=Clostridium difficile RepID=T3HRA0_CLODC
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CDS86451.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG97928.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5606..5989)
DNA (384bp) protein (128aa)
Putative phage protein n=26 Tax=Clostridium difficile RepID=T3HSJ1_CLODC
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CEJ97811.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG97955.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6116..6460
DNA (345bp) protein (115aa)
Uncharacterized protein n=69 Tax=Clostridium difficile RepID=G6BMS3_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26094.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_022_000G1_scaffold_236_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7844..8161)
DNA (318bp) protein (106aa)
Putative phage protein n=2 Tax=Clostridium difficile RepID=U3Y2E9_CLODI
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CAJ68093.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_236_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8324..8497
DNA (174bp) protein (58aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=T3HQT3_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ97815.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8604..8786)
DNA (183bp) protein (61aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=G6BMS0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE67505.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L2_022_000G1_scaffold_236_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9222..9611
DNA (390bp) protein (130aa)
Penicillinase repressor family protein n=28 Tax=Clostridium difficile RepID=T3HVN6_CLODC
Transcriptional regulator, beta-lactamsrepressor Phage-type
Beta-lactamase repressor {ECO:0000313|EMBL:CKG98041.1}; Transcriptional regulator, beta-lactamsrepressor Phage-type {ECO:0000313|EMBL:CEJ97817.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9936..10445
DNA (510bp) protein (170aa)
Teicoplanin resistance protein n=83 Tax=Clostridium difficile RepID=Q18BA1_CLOD6
vanZ; teicoplanin resistance protein
Teicoplanin resistance protein {ECO:0000313|EMBL:CAJ68095.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_236_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10547..10741)
DNA (195bp) protein (65aa)
Uncharacterized protein n=142 Tax=Clostridium difficile RepID=T3HRY0_CLODC
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CCK93394.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L2_022_000G1_scaffold_236_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10805..10924
DNA (120bp) protein (40aa)
Uncharacterized protein n=50 Tax=Clostridium difficile RepID=T2U2R1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQH98469.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_022_000G1_scaffold_236_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11257..11649)
DNA (393bp) protein (131aa)
RNA polymerase sigma factor, sigma-70 family protein n=26 Tax=Clostridium difficile RepID=T3HTH6_CLODC
sigK; Sigma K
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_236_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12216..12578
DNA (363bp) protein (121aa)
Uncharacterized protein n=13 Tax=Clostridium difficile RepID=U3XGV8_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29310.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_236_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12562..13296
DNA (735bp) protein (245aa)
Uncharacterized protein n=28 Tax=Clostridium difficile RepID=T3HQG6_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG98159.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ97821.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13316..13735
DNA (420bp) protein (140aa)
Uncharacterized protein n=61 Tax=Clostridium difficile RepID=T3HVE0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE67407.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_022_000G1_scaffold_236_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13725..14249
DNA (525bp) protein (175aa)
Uncharacterized protein n=23 Tax=Clostridium difficile RepID=T3HWC3_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG98276.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ97823.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_236_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14561..15118
DNA (558bp) protein (186aa)
Elongation factor P n=216 Tax=Clostridium difficile RepID=EFP_CLOD6
efp; elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_022_000G1_scaffold_236_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15210..15665
DNA (456bp) protein (152aa)
Uncharacterized protein n=208 Tax=Clostridium difficile RepID=T3HRS4_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQG77872.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_236_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15828..16538
DNA (711bp) protein (237aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Ribonuclease 3 n=187 Tax=Clostridium difficile RepID=C9XNX6_CLODC
rnc; ribonuclease III
L2_022_000G1_scaffold_236_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16592..17662
DNA (1071bp) protein (357aa)
Radical SAM superfamily protein n=149 Tax=Clostridium difficile RepID=C9XNX7_CLODC
radical SAM protein
Radical SAM superfamily protein {ECO:0000313|EMBL:EQI86928.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_022_000G1_scaffold_236_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17690..21244
DNA (3555bp) protein (1185aa)
Chromosome partition protein Smc n=18 Tax=Clostridium difficile RepID=T3HWC8_CLODC
smc; Structural maintenance chromosome protein SMC
Structural maintenance chromosome protein SMC {ECO:0000313|EMBL:CAJ68105.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_236_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21271..22551
DNA (1281bp) protein (427aa)
Signal recognition particle receptor FtsY n=6 Tax=Clostridium difficile RepID=T3HTI6_CLODC
ftsY; signal recognition particle-docking protein FtsY
Signal recognition particle receptor {ECO:0000313|EMBL:CAJ68106.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_236_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22654..23022
DNA (369bp) protein (123aa)
Sigma-70, region 4 family protein n=205 Tax=Clostridium difficile RepID=C9XNY0_CLODC
hypothetical protein
UPF0122 protein QKA_0896 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_022_000G1_scaffold_236_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23019..24371
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=6 Tax=Clostridium difficile RepID=T3HQH7_CLODC
ffh; Signal recognition particle protein
Signal recognition particle protein {ECO:0000313|EMBL:CAJ68108.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_236_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24409..24681
DNA (273bp) protein (91aa)
30S ribosomal protein S16 n=222 Tax=Clostridium difficile RepID=RS16_CLOD6
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_022_000G1_scaffold_236_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24746..24973
DNA (228bp) protein (76aa)
UPF0109 protein CD196_1116 n=210 Tax=Clostridium difficile RepID=C9XNY3_CLODC
hypothetical protein
UPF0109 protein QQG_1450 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_022_000G1_scaffold_236_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25081..25596
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=127 Tax=Clostridium difficile RepID=RIMM_CLOD6
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 89 in total

View Taxonomy