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L2_022_000G1_scaffold_580

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000G1_scaffold_580_1
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65..1228)
DNA (1164bp) protein (388aa)
rRNA (Guanine-N(2)-)-methyltransferase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M2U6_9CLOT
rRNA (Guanine-N(2)-)-methyltransferase {ECO:0000313|EMBL:EHI99598.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
RNA methylase
L2_022_000G1_scaffold_580_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1257..1826)
DNA (570bp) protein (190aa)
pyrR; bifunctional protein PyrR (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSA2_CLOSA
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_022_000G1_scaffold_580_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1819..2730)
DNA (912bp) protein (304aa)
ylyB; RNA pseudouridine synthase YlyB (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
RNA pseudouridine synthase YlyB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSX0_CLOSA
L2_022_000G1_scaffold_580_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2919..3602)
DNA (684bp) protein (228aa)
DivIVA domain containing protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TAH1_9CLOT
DivIVA domain containing protein {ECO:0000313|EMBL:EKQ56888.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
DivIVA family protein
L2_022_000G1_scaffold_580_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3616..4380)
DNA (765bp) protein (255aa)
S4 domain protein n=2 Tax=Clostridium butyricum RepID=B1QW46_CLOBU
RNA-binding protein S4 {ECO:0000313|EMBL:KHD16895.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
RNA-binding S4 domain-containing protein
L2_022_000G1_scaffold_580_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4374..4655)
DNA (282bp) protein (94aa)
Yggt family protein n=2 Tax=Clostridium butyricum RepID=M8JK95_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD16894.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
YGGT family
L2_022_000G1_scaffold_580_7
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4664..5119)
DNA (456bp) protein (152aa)
Cell division protein SepF n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSA5_CLOSA
sepF; cell division protein SepF
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_022_000G1_scaffold_580_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5137..5799)
DNA (663bp) protein (221aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSX5_CLOSA
pyridoxal phosphate enzyme, YggS family
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:AGX43695.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_022_000G1_scaffold_580_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5895..6638)
DNA (744bp) protein (248aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LTT1_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR33761.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_022_000G1_scaffold_580_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6635..7012)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW70_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83186.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_022_000G1_scaffold_580_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7025..7753)
DNA (729bp) protein (243aa)
Division initiation protein n=4 Tax=Clostridium butyricum RepID=B1QW51_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ34279.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L2_022_000G1_scaffold_580_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7851..8603)
DNA (753bp) protein (251aa)
Cell division protein DivIB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSB0_CLOSA
divIB; cell division protein DivIB
Cell division protein DivIB {ECO:0000313|EMBL:AGX43699.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_022_000G1_scaffold_580_13
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8771..9880)
DNA (1110bp) protein (370aa)
Stage V sporulation protein E n=1 Tax=Clostridium sp. DL-VIII RepID=G7M2T2_9CLOT
Stage V sporulation protein E {ECO:0000313|EMBL:EHI99584.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
spoVE2; stage V sporulation protein E
L2_022_000G1_scaffold_580_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9902..10876)
DNA (975bp) protein (325aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase MraY (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVN2_CLOSA
L2_022_000G1_scaffold_580_15
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10894..12270)
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M2T0_9CLOT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
L2_022_000G1_scaffold_580_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12328..13785)
DNA (1458bp) protein (486aa)
murE2; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MT41_CLOSA
L2_022_000G1_scaffold_580_17
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13867..16074)
DNA (2208bp) protein (736aa)
Stage V sporulation protein D n=2 Tax=Clostridium RepID=A6LTS2_CLOB8
stage V sporulation protein D
Stage V sporulation protein D {ECO:0000313|EMBL:ETD69466.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_022_000G1_scaffold_580_18
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16191..16703)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G1D4_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD69467.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_022_000G1_scaffold_580_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16758..17690)
DNA (933bp) protein (311aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rsmH; ribosomal RNA small subunit methyltransferase H (EC:2.1.1.199)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVN7_CLOSA
L2_022_000G1_scaffold_580_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17703..18131)
DNA (429bp) protein (143aa)
Protein MraZ n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TVY5_9CLOT
cell division protein MraZ
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L2_022_000G1_scaffold_580_21
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18441..20876)
DNA (2436bp) protein (812aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Clostridium beijerinckii RepID=UPI0003101236
pheT; phenylalanyl-tRNA synthetase subunit beta
L2_022_000G1_scaffold_580_22
unknown

Not on your lists

comp(21114..21230)
DNA (117bp) protein (39aa)

This feature has no annotations

L2_022_000G1_scaffold_580_23
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21396..22415)
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Clostridium RepID=SYFA_CLOB8
pheS; phenylalanyl-tRNA synthetase subunit alpha
L2_022_000G1_scaffold_580_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22781..23569)
DNA (789bp) protein (263aa)
ysgA; tRNA/rRNA methyltransferase YsgA (EC:2.1.1.-)
tRNA/rRNA methyltransferase YsgA {ECO:0000313|EMBL:AGX43710.1}; EC=2.1.1.- {ECO:0000313|EMBL:AGX43710.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA/rRNA methyltransferase YsgA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSY8_CLOSA
L2_022_000G1_scaffold_580_25
unknown

Not on your lists

comp(23748..24167)
DNA (420bp) protein (140aa)

This feature has no annotations

L2_022_000G1_scaffold_580_26
unknown

Not on your lists

comp(24189..24281)
DNA (93bp) protein (31aa)

This feature has no annotations

L2_022_000G1_scaffold_580_27
unknown

Not on your lists

comp(24351..24839)
DNA (489bp) protein (163aa)

This feature has no annotations

L2_022_000G1_scaffold_580_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24917..25669)
DNA (753bp) protein (251aa)
RNA polymerase sigma-F factor n=2 Tax=Clostridium botulinum B RepID=B2THE9_CLOBB
RNA polymerase sigma-F factor
RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:CDH89028.1}; RNA polymerase sigma-F factor {ECO:0000313|EMBL:ACD24853.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L2_022_000G1_scaffold_580_29
unknown

Not on your lists

comp(25755..26132)
DNA (378bp) protein (126aa)

This feature has no annotations

L2_022_000G1_scaffold_580_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26122..26430)
DNA (309bp) protein (103aa)
SMC domain protein n=2 Tax=Clostridium perfringens RepID=B1V2W9_CLOPF
SMC domain protein {ECO:0000313|EMBL:EDT71838.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
hypothetical protein
Displaying items 1-30 of 62 in total

View Taxonomy