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L2_022_000G1_scaffold_1900

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000G1_scaffold_1900_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..300)
DNA (300bp) protein (100aa)
lantibiotic ABC transporter permease n=1 Tax=Clostridium difficile RepID=UPI00017F54FC
ABC-type transport system, multidrug-familypermease Tn1549-like, CTn4-Orf30
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf30 {ECO:0000313|EMBL:CAJ67939.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_1900_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(306..1115)
DNA (810bp) protein (270aa)
lantibiotic ABC transporter permease n=1 Tax=Clostridium difficile RepID=UPI00036FFE4A
ABC-type transport system, multidrug-familypermease Tn1549-like, CTn4-Orf29
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf29 {ECO:0000313|EMBL:CAJ67940.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_1900_3
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1108..1215)
DNA (108bp) protein (36aa)
multidrug family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, multidrug-family ATP-binding protein Tn1549-like, CTn4-Orf28 n=7 Tax=Clostridium difficile RepID=Q18AU9_CLOD6
Bacitracin ABC transporter, ATP-binding protein BcrA {ECO:0000313|EMBL:ERI90289.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L2_022_000G1_scaffold_1900_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1224..1913)
DNA (690bp) protein (230aa)
ABC-type transport system, multidrug-familyATP-binding protein Tn1549-like, CTn4-Orf28 (EC:3.6.3.-)
ABC-type transport system, multidrug-familyATP-binding protein Tn1549-like, CTn4-Orf28 {ECO:0000313|EMBL:CEJ97659.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEJ97659.1};; Lantibiotic ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKG93555.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKG93555.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=8 Tax=Clostridium difficile RepID=T3ES46_CLODI
L2_022_000G1_scaffold_1900_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2050..2967)
DNA (918bp) protein (306aa)
Sensor protein {ECO:0000313|EMBL:CKG93581.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKG93581.1};; Two-component sensor histidinekinase,Tn1549-like, CTn4-Orf27 {ECO:0000313|EMBL:CEJ97660.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Two-component sensor histidine kinase,Tn1549-like, CTn4-Orf27 n=16 Tax=Clostridium difficile RepID=Q18AU8_CLOD6
Two-component sensor histidinekinase,Tn1549-like, CTn4-Orf27
L2_022_000G1_scaffold_1900_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2974..3666)
DNA (693bp) protein (231aa)
Two-component response regulator,Tn1549-like,CTn4-Orf26 n=7 Tax=Clostridium difficile RepID=Q18AV3_CLOD6
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CKG93606.1}; Two-component responseregulator,Tn1549-like,CTn4-Orf26 {ECO:0000313|EMBL:CEJ97661.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_000G1_scaffold_1900_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3821..4075)
DNA (255bp) protein (85aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf32 n=2 Tax=Clostridium difficile RepID=Q18AU6_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf32
Putative conjugative transposon protein Tn1549-like, CTn4-Orf32 {ECO:0000313|EMBL:CAJ67937.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_000G1_scaffold_1900_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4056..4496)
DNA (441bp) protein (147aa)
RNA polymerase sigma factor, sigma-70 family protein n=6 Tax=Clostridium difficile RepID=T3NCC7_CLODI
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog {ECO:0000313|EMBL:CBL26608.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_022_000G1_scaffold_1900_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4980..5276)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK16_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10696.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5281..6045)
DNA (765bp) protein (255aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK15_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL10695.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6060..6785)
DNA (726bp) protein (242aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK14_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL10694.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6782..7546)
DNA (765bp) protein (255aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK13_9FIRM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CBL10693.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7694..8398
DNA (705bp) protein (235aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK12_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL10692.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8400..9794
DNA (1395bp) protein (465aa)
Signal transduction histidine kinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK11_9FIRM
Signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CBL10691.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9930..12290)
DNA (2361bp) protein (787aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNE3_9FIRM
ABC-type transport system, involved in lipoprotein release, permease component
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CBL08395.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000G1_scaffold_1900_16
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12274..12969)
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=B0NHB0_CLOSV
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS05987.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_022_000G1_scaffold_1900_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13033..14262)
DNA (1230bp) protein (410aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037C53E9
Signal transduction histidine kinase
L2_022_000G1_scaffold_1900_18

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comp(14265..14957)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family (Fragment) n=1 Tax=human gut metagenome RepID=K1T4B7_9ZZZZ
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EKC64568.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_022_000G1_scaffold_1900_19
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14950..15129)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIX2_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK77646.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_022_000G1_scaffold_1900_20
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15290..15649
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=U4AF77_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDB79301.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
Predicted transcription factor, homolog of eukaryotic MBF1
L2_022_000G1_scaffold_1900_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15893..16222
DNA (330bp) protein (110aa)
Bacterial mobilization family protein n=1 Tax=Clostridium difficile P28 RepID=T4P6C9_CLODI
Bacterial mobilization family protein {ECO:0000313|EMBL:EQJ63152.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
mobilization protein
L2_022_000G1_scaffold_1900_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16183..17529
DNA (1347bp) protein (449aa)
Relaxase/mobilization nuclease domain protein n=4 Tax=Clostridium difficile RepID=T3FF64_CLODI
Relaxase/Mobilisation nuclease domain.
Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CBL26616.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_022_000G1_scaffold_1900_23
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

17603..18631
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EPR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01910.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L2_022_000G1_scaffold_1900_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18805..19170)
DNA (366bp) protein (122aa)
Cysteine-rich VLP family protein n=1 Tax=Clostridium difficile P28 RepID=T4P093_CLODI
Cysteine-rich VLP family protein {ECO:0000313|EMBL:EQJ63158.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
conjugative transposon protein
L2_022_000G1_scaffold_1900_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19167..19373)
DNA (207bp) protein (69aa)
Uncharacterized protein n=3 Tax=root RepID=C7H731_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU96281.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L2_022_000G1_scaffold_1900_26
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19376..20320)
DNA (945bp) protein (315aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3ENF1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26619.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_022_000G1_scaffold_1900_27
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20324..20692)
DNA (369bp) protein (123aa)
YodL-like family protein n=1 Tax=Clostridium difficile P38 RepID=T4PM05_CLODI
Uncharacterized protein {ECO:0000313|EMBL:ENY84345.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Domain of unknown function (DUF955)./Antirestriction protein (ArdA).
L2_022_000G1_scaffold_1900_28

Not on your lists

comp(20763..21497)
DNA (735bp) protein (245aa)
Antirestriction protein ArdA n=3 Tax=root RepID=A7VXX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKC46180.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
antirestriction protein
Displaying 28 items

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