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L2_022_000M1_scaffold_228

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000M1_scaffold_228_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..112)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43636.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_022_000M1_scaffold_228_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(123..716)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KTM9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10231.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_228_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(848..1804)
DNA (957bp) protein (319aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL13467.1}; EC=2.7.1.4 {ECO:0000313|EMBL:CBL13467.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Sugar kinases, ribokinase family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1H7_9FIRM
L2_022_000M1_scaffold_228_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2370..4622)
DNA (2253bp) protein (751aa)
Alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase {ECO:0000313|EMBL:CBL10229.1}; EC=3.2.1.22 {ECO:0000313|EMBL:CBL10229.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Alpha-galactosidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KTM7_9FIRM
L2_022_000M1_scaffold_228_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4647..6329)
DNA (1683bp) protein (561aa)
Glycosidases (EC:3.2.1.10)
Oligo-1 6-glucosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B198_9FIRM
Oligo-1 6-glucosidase {ECO:0000313|EMBL:CDA56975.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_228_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6411..7388)
DNA (978bp) protein (326aa)
Transcriptional regulators n=2 Tax=Roseburia RepID=D4L1H4_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CDA56976.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_228_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7376..9067)
DNA (1692bp) protein (564aa)
Beta-fructosidases (Levanase/invertase) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1H3_9FIRM
Beta-fructosidases (levanase/invertase)
Beta-fructosidases (Levanase/invertase) {ECO:0000313|EMBL:CBL13463.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9138..9605)
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KTM3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10225.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_228_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9962..14080)
DNA (4119bp) protein (1373aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Putative carbohydrate binding domain protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1A3_9FIRM
Listeria/Bacterioides repeat
L2_022_000M1_scaffold_228_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14315..14893)
DNA (579bp) protein (193aa)
Listeria/Bacterioides repeat n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BD06_9FIRM
Listeria/Bacterioides repeat {ECO:0000313|EMBL:CDA56981.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Listeria/Bacterioides repeat
L2_022_000M1_scaffold_228_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15102..15365)
DNA (264bp) protein (88aa)
30S ribosomal protein S18 n=4 Tax=Roseburia RepID=D4KTM0_9FIRM
SSU ribosomal protein S18P
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15424..15870)
DNA (447bp) protein (149aa)
Single-stranded DNA-binding protein n=4 Tax=Roseburia RepID=D4KTL9_9FIRM
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_228_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15920..16210)
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=4 Tax=Roseburia RepID=D4KTL8_9FIRM
SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16345..16536)
DNA (192bp) protein (64aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Roseburia intestinalis RepID=D4KTL7_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL10219.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_228_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16568..17041)
DNA (474bp) protein (158aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1G2_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL13452.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17083..17805)
DNA (723bp) protein (241aa)
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968, ECO:0000313|EMBL:CBL13451.1};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
NAD-dependent protein deacetylase n=2 Tax=Roseburia RepID=D4L1G1_9FIRM
L2_022_000M1_scaffold_228_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17808..19514)
DNA (1707bp) protein (569aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBS5_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA56551.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Methyl-accepting chemotaxis protein
L2_022_000M1_scaffold_228_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19818..20342)
DNA (525bp) protein (175aa)
Transporter gate domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G9A5_9FIRM
Transporter gate domain protein {ECO:0000313|EMBL:EEV01578.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Uncharacterized membrane protein
L2_022_000M1_scaffold_228_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20395..22059)
DNA (1665bp) protein (555aa)
Diguanylate cyclase (GGDEF) domain n=3 Tax=Roseburia RepID=D4KTL3_9FIRM
diguanylate cyclase (GGDEF) domain
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDA56539.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_228_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22151..22771)
DNA (621bp) protein (207aa)
Uncharacterized membrane protein, required for spore maturation in B.subtilis n=2 Tax=Roseburia intestinalis RepID=D4KTL2_9FIRM
Uncharacterized membrane protein, required for spore maturation in B.subtilis.
Uncharacterized membrane protein, required for spore maturation in B.subtilis {ECO:0000313|EMBL:CBL13447.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22918..24795
DNA (1878bp) protein (626aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56536.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_022_000M1_scaffold_228_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24808..25653)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B067_9FIRM
conserved hypothetical protein TIGR00096
L2_022_000M1_scaffold_228_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25744..26577)
DNA (834bp) protein (278aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G998_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEV01647.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L2_022_000M1_scaffold_228_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26605..27387)
DNA (783bp) protein (261aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=3 Tax=Roseburia RepID=D4L1F4_9FIRM
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:CBL13444.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27387..28457)
DNA (1071bp) protein (357aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=2 Tax=Roseburia RepID=D4L1F3_9FIRM
ABC transporter, substrate-binding protein, aliphatic sulfonates family
ABC transporter substrate-binding protein aliphatic sulfonates family {ECO:0000313|EMBL:CDA56532.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_228_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28488..28829)
DNA (342bp) protein (114aa)
Nitrogen regulatory protein PII n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KTK7_9FIRM
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CDA56531.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Nitrogen regulatory protein PII
L2_022_000M1_scaffold_228_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28845..29207)
DNA (363bp) protein (121aa)
Nitrogen regulatory protein P-II n=2 Tax=Roseburia intestinalis RepID=D4L1F1_9FIRM
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CBL13441.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_228_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29270..30976)
DNA (1707bp) protein (569aa)
allophanate hydrolase (EC:6.3.5.7 6.3.5.6)
Allophanate hydrolase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXD1_9FIRM
Allophanate hydrolase {ECO:0000313|EMBL:CDA56528.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_228_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30993..34574)
DNA (3582bp) protein (1194aa)
Urea carboxylase {ECO:0000313|EMBL:EEV01641.1}; EC=6.3.4.6 {ECO:0000313|EMBL:EEV01641.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Urea carboxylase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G992_9FIRM
urea carboxylase
L2_022_000M1_scaffold_228_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34604..35257)
DNA (654bp) protein (218aa)
Urea carboxylase-associated protein 1 n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1E8_9FIRM
urea carboxylase-associated protein 1
Urea carboxylase-associated protein 1 {ECO:0000313|EMBL:CBL13438.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 56 in total

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