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L2_022_000M1_scaffold_229

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000M1_scaffold_229_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..941
DNA (939bp) protein (313aa)
threonine dehydratase, medium form (EC:4.3.1.19)
Threonine dehydratase, medium form {ECO:0000313|EMBL:CBL12782.1}; EC=4.3.1.19 {ECO:0000313|EMBL:CBL12782.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Threonine dehydratase, medium form n=2 Tax=Roseburia RepID=D4KZJ2_9FIRM
L2_022_000M1_scaffold_229_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1094..1486)
DNA (393bp) protein (131aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GEV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57423.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_229_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1712..2056
DNA (345bp) protein (115aa)
UPF0122 protein ROSINTL182_08460 n=2 Tax=Roseburia RepID=C7GEV8_9FIRM
UPF0122 protein ROSINTL182_08460 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_022_000M1_scaffold_229_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2057..3403
DNA (1347bp) protein (449aa)
Signal recognition particle protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMV0_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
signal recognition particle protein
L2_022_000M1_scaffold_229_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3439..3684
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Roseburia RepID=D4KN06_9FIRM
SSU ribosomal protein S16P
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_229_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3703..3933
DNA (231bp) protein (77aa)
UPF0109 protein ROI_10620 n=4 Tax=Roseburia RepID=D4KN07_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein ROSINTL182_08457 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_000M1_scaffold_229_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4014..4751
DNA (738bp) protein (246aa)
Bacterial group 2 Ig-like protein n=2 Tax=Roseburia intestinalis RepID=C7GEV4_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EEU99636.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bacterial Ig-like domain (group 2).
L2_022_000M1_scaffold_229_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4807..5340
DNA (534bp) protein (178aa)
Ribosome maturation factor RimM n=2 Tax=Roseburia intestinalis RepID=D4KN09_9FIRM
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_000M1_scaffold_229_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5337..6053
DNA (717bp) protein (239aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KZK1_9FIRM
L2_022_000M1_scaffold_229_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6183..6536
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=4 Tax=Roseburia RepID=D4KN11_9FIRM
ribosomal protein L19, bacterial type
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_229_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6625..6990)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00251.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_022_000M1_scaffold_229_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7229..7969
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZK3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12793.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_229_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8156..9370
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B2Y6_9FIRM
L2_022_000M1_scaffold_229_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9472..10770
DNA (1299bp) protein (433aa)
Response regulator/phosphatase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BEF0_9FIRM
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:CBL08266.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_229_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10791..11336
DNA (546bp) protein (182aa)
DnaJ domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD60_9FIRM
DnaJ domain protein {ECO:0000313|EMBL:EEV00247.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DnaJ domain.
L2_022_000M1_scaffold_229_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11555..12160
DNA (606bp) protein (202aa)
phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein (EC:2.7.1.39 3.1.3.3)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZT5_9FIRM
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein {ECO:0000313|EMBL:CDA57448.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_229_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12199..13041
DNA (843bp) protein (281aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD58_9FIRM
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EEV00245.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Esterase/lipase
L2_022_000M1_scaffold_229_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13204..13683)
DNA (480bp) protein (160aa)
LuxS protein involved in autoinducer AI2 synthesis (EC:4.4.1.21)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
S-ribosylhomocysteine lyase n=4 Tax=Roseburia RepID=D4KN19_9FIRM
L2_022_000M1_scaffold_229_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13877..14644
DNA (768bp) protein (256aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00131282}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00064821, ECO:0000313|EMBL:CBL12800.1};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00064819}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00131176}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZL0_9FIRM
L2_022_000M1_scaffold_229_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14750..16291
DNA (1542bp) protein (514aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZL1_9FIRM
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:CBL12801.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_229_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16281..17021
DNA (741bp) protein (247aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL08275.1}; EC=3.6.3.21 {ECO:0000313|EMBL:CBL08275.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=4 Tax=Roseburia RepID=D4KN23_9FIRM
L2_022_000M1_scaffold_229_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17074..17253)
DNA (180bp) protein (60aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GD51_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57454.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_229_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17634..18617
DNA (984bp) protein (328aa)
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal protein L11 methyltransferase n=3 Tax=Roseburia RepID=D4KN25_9FIRM
L2_022_000M1_scaffold_229_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18659..19414
DNA (756bp) protein (252aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BEG1_9FIRM
hypothetical protein
L2_022_000M1_scaffold_229_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19581..20735
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=2 Tax=Roseburia RepID=C7GD48_9FIRM
Aminotransferase, class V {ECO:0000313|EMBL:EEV00271.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_000M1_scaffold_229_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20761..21942
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Probable tRNA sulfurtransferase n=3 Tax=Roseburia RepID=D4KZL5_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L2_022_000M1_scaffold_229_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22114..22344)
DNA (231bp) protein (77aa)
PTS HPr component phosphorylation site n=4 Tax=Roseburia RepID=D4KN28_9FIRM
PTS HPr component phosphorylation site.
Uncharacterized protein {ECO:0000313|EMBL:EEV00269.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_000M1_scaffold_229_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22444..23751
DNA (1308bp) protein (436aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD45_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EEV00268.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_000M1_scaffold_229_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23807..24079
DNA (273bp) protein (91aa)
UPF0297 protein BN484_00872 n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZV2_9FIRM
UPF0297 protein BN484_00872 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_022_000M1_scaffold_229_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24087..24521
DNA (435bp) protein (145aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Putative Holliday junction resolvase n=3 Tax=Roseburia RepID=D4KN30_9FIRM
conserved hypothetical protein TIGR00250
Displaying items 1-30 of 67 in total

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