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L2_022_000M1_scaffold_381

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000M1_scaffold_381_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(127..381)
DNA (255bp) protein (85aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZB6_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL12706.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_381_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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599..1849
DNA (1251bp) protein (417aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidyl-tRNA synthetase {ECO:0000313|EMBL:CBL08195.1}; EC=6.1.1.21 {ECO:0000313|EMBL:CBL08195.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Histidyl-tRNA synthetase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMU3_9FIRM
L2_022_000M1_scaffold_381_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1979..3772
DNA (1794bp) protein (598aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CBL12708.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CBL12708.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Aspartate--tRNA ligase n=4 Tax=Roseburia RepID=D4KMU4_9FIRM
L2_022_000M1_scaffold_381_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3828..6140
DNA (2313bp) protein (771aa)
Bacterial alpha-L-rhamnosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AWR0_9FIRM
Bacterial alpha-L-rhamnosidase {ECO:0000313|EMBL:CDA56353.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Bacterial alpha-L-rhamnosidase.
L2_022_000M1_scaffold_381_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6112..7299
DNA (1188bp) protein (396aa)
Glycosyl Hydrolase Family 88 n=2 Tax=Roseburia RepID=D4KMU6_9FIRM
Glycosyl Hydrolase Family 88.
Glycosyl Hydrolase Family 88 {ECO:0000313|EMBL:CDA56349.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7337..8233
DNA (897bp) protein (299aa)
AraC-type DNA-binding domain-containing proteins n=2 Tax=Roseburia RepID=D4KMU7_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDA56348.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8349..10802
DNA (2454bp) protein (818aa)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMU8_9FIRM
Beta-galactosidase/beta-glucuronidase
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CBL08200.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_381_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10783..12147
DNA (1365bp) protein (455aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6BB32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56346.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
transporter
L2_022_000M1_scaffold_381_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12230..13261
DNA (1032bp) protein (344aa)
Transcriptional regulators n=3 Tax=Roseburia intestinalis RepID=D4KMU9_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL08201.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_381_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13462..14583
DNA (1122bp) protein (374aa)
Sugar ABC transporter permease protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B5M1_9FIRM
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CDA56344.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
sugar ABC transporter permease
L2_022_000M1_scaffold_381_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14602..15507
DNA (906bp) protein (302aa)
ABC-type sugar transport system, permease component n=4 Tax=Roseburia RepID=D4KZC4_9FIRM
ABC-type sugar transport system, permease component
ABC-type sugar transport system permease component {ECO:0000313|EMBL:CDA56343.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15612..17261
DNA (1650bp) protein (550aa)
ABC-type sugar transport system periplasmic component n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BST8_9FIRM
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:CDA56342.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ABC-type sugar transport system, periplasmic component
L2_022_000M1_scaffold_381_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17393..19138
DNA (1746bp) protein (582aa)
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BB28_9FIRM
Beta-galactosidase {ECO:0000313|EMBL:CDA56341.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19183..20091
DNA (909bp) protein (303aa)
Glycosyl hydrolases family 43 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMV3_9FIRM
Glycosyl hydrolases family 43.
Glycosyl hydrolases family 43 {ECO:0000313|EMBL:CBL08205.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_381_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20093..21895
DNA (1803bp) protein (601aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.31)
Beta-galactosidase/beta-glucuronidase n=2 Tax=Bacteria RepID=R6B5L5_9FIRM
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CDA56339.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21939..23870
DNA (1932bp) protein (644aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Roseburia RepID=R6BE60_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA57366.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_022_000M1_scaffold_381_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23880..25193)
DNA (1314bp) protein (438aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Melibiase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BVY7_9FIRM
Melibiase.
L2_022_000M1_scaffold_381_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25384..25959
DNA (576bp) protein (192aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G6W4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57368.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26067..26765
DNA (699bp) protein (233aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Roseburia RepID=R6B8V9_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDA57369.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_022_000M1_scaffold_381_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26765..28291
DNA (1527bp) protein (509aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
His Kinase A (Phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZE5_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain.
L2_022_000M1_scaffold_381_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28433..29146
DNA (714bp) protein (238aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7G6W0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08212.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_381_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29146..29262
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57373.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29241..30149
DNA (909bp) protein (303aa)
Chemotaxis signal transduction protein n=4 Tax=Roseburia RepID=D4KMW1_9FIRM
Chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:CDA57374.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30223..31644
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6V8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02452.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_022_000M1_scaffold_381_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31647..32252
DNA (606bp) protein (202aa)
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278, ECO:0000313|EMBL:CBL08215.1};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMW3_9FIRM
L2_022_000M1_scaffold_381_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32268..33029
DNA (762bp) protein (254aa)
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013, ECO:0000313|EMBL:CBL12741.1};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Imidazole glycerol phosphate synthase subunit HisF n=3 Tax=Roseburia RepID=D4KMW4_9FIRM
L2_022_000M1_scaffold_381_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33046..33723
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Uracil-DNA glycosylase n=3 Tax=Roseburia RepID=D4KZF2_9FIRM
L2_022_000M1_scaffold_381_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34081..34872
DNA (792bp) protein (264aa)
Flagellar hook-associated protein 2 C-terminus n=2 Tax=Roseburia RepID=D4KMW6_9FIRM
Flagellar hook-associated protein 2 C-terminus.
Flagellar hook-associated protein 2 C-terminus {ECO:0000313|EMBL:CDA57380.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_381_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35162..36241
DNA (1080bp) protein (360aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMW8_9FIRM
L2_022_000M1_scaffold_381_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36334..38784
DNA (2451bp) protein (817aa)
methionine synthase (B12-dependent) (EC:2.1.1.13)
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6V2_9FIRM
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EEV02446.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying 30 items

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