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L2_022_000M1_scaffold_408

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_000M1_scaffold_408_1
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..662
DNA (660bp) protein (220aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HSF2_9FIRM
L2_022_000M1_scaffold_408_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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903..1556
DNA (654bp) protein (218aa)
Protease subunit of ATP-dependent Clp proteases n=4 Tax=Roseburia RepID=D4KXL3_9FIRM
Protease subunit of ATP-dependent Clp proteases
Protease subunit of ATP-dependent Clp proteases {ECO:0000313|EMBL:CBL12103.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1660..2538
DNA (879bp) protein (293aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GH69_9FIRM
L2_022_000M1_scaffold_408_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2590..5325
DNA (2736bp) protein (912aa)
FtsK/SpoIIIE family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9B5_9FIRM
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:CDA55571.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA translocase FtsK
L2_022_000M1_scaffold_408_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5344..7014
DNA (1671bp) protein (557aa)
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Formate--tetrahydrofolate ligase n=4 Tax=Roseburia RepID=D4KQV7_9FIRM
L2_022_000M1_scaffold_408_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7038..8165
DNA (1128bp) protein (376aa)
Tetratricopeptide repeat protein n=2 Tax=Roseburia RepID=C7GE65_9FIRM
Cell surface protein {ECO:0000313|EMBL:CDA55569.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_022_000M1_scaffold_408_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8259..8840)
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUL7_9FIRM
L2_022_000M1_scaffold_408_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8906..9430)
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09261.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_022_000M1_scaffold_408_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9593..10084
DNA (492bp) protein (164aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK9_9FIRM
conserved hypothetical protein TIGR00246
L2_022_000M1_scaffold_408_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10154..11680
DNA (1527bp) protein (509aa)
Beta-xylosidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK8_9FIRM
Beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:CBL12098.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11798..13324)
DNA (1527bp) protein (509aa)
SSS sodium solute transporter superfamily n=2 Tax=Roseburia intestinalis RepID=D4KXK7_9FIRM
SSS sodium solute transporter superfamily
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:CBL12097.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13643..14848
DNA (1206bp) protein (402aa)
Chloride transporter, ClC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE71_9FIRM
Chloride transporter, ClC family {ECO:0000313|EMBL:EEU99860.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Chloride channel protein EriC
L2_022_000M1_scaffold_408_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15029..15667
DNA (639bp) protein (213aa)
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Endonuclease III n=3 Tax=Roseburia RepID=D4KXK6_9FIRM
L2_022_000M1_scaffold_408_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15815..16603
DNA (789bp) protein (263aa)
Uncharacterized protein with SCP/PR1 domains n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK5_9FIRM
Uncharacterized protein with SCP/PR1 domains
Uncharacterized protein with SCP/PR1 domains {ECO:0000313|EMBL:CBL12095.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16816..17634
DNA (819bp) protein (273aa)
FAD binding domain in molybdopterin dehydrogenase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE76_9FIRM
FAD binding domain in molybdopterin dehydrogenase {ECO:0000313|EMBL:EEU99865.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
L2_022_000M1_scaffold_408_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17715..18179
DNA (465bp) protein (155aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs (EC:1.2.99.2)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs {ECO:0000313|EMBL:CBL09268.1}; EC=1.2.99.2 {ECO:0000313|EMBL:CBL09268.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs n=2 Tax=Roseburia RepID=D4KQW6_9FIRM
L2_022_000M1_scaffold_408_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18176..20479
DNA (2304bp) protein (768aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:CBL12091.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CBL12091.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK1_9FIRM
L2_022_000M1_scaffold_408_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20613..21110
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99868.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
molybdopterin-guanine dinucleotide biosynthesis protein A
L2_022_000M1_scaffold_408_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21097..22404
DNA (1308bp) protein (436aa)
thymidine phosphorylase (EC:2.4.2.4 2.4.2.2)
Thymidine phosphorylase {ECO:0000313|EMBL:CBL09270.1}; EC=2.4.2.2 {ECO:0000313|EMBL:CBL09270.1};; EC=2.4.2.4 {ECO:0000313|EMBL:CBL09270.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Thymidine phosphorylase n=2 Tax=Roseburia intestinalis RepID=D4KQW8_9FIRM
L2_022_000M1_scaffold_408_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22440..22709
DNA (270bp) protein (90aa)
YabP family n=4 Tax=Roseburia RepID=D4KQW9_9FIRM
YabP family.
YabP family {ECO:0000313|EMBL:CBL12089.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22713..23960
DNA (1248bp) protein (416aa)
Putative stage IV sporulation protein YqfD n=4 Tax=Roseburia RepID=D4KXJ8_9FIRM
Putative stage IV sporulation protein YqfD.
Putative stage IV sporulation protein YqfD {ECO:0000313|EMBL:CDA55547.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_408_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23947..24945
DNA (999bp) protein (333aa)
Phosphate starvation-inducible protein PhoH, predicted ATPase n=3 Tax=Roseburia RepID=D4KQX1_9FIRM
Phosphate starvation-inducible protein PhoH, predicted ATPase
KH domain protein {ECO:0000313|EMBL:EEU99872.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_000M1_scaffold_408_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24942..26135
DNA (1194bp) protein (398aa)
Uncharacterized domain HDIG n=4 Tax=Roseburia RepID=D4KQX2_9FIRM
uncharacterized domain HDIG
Uncharacterized domain HDIG {ECO:0000313|EMBL:CDA55543.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_408_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26197..26694
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Endoribonuclease YbeY n=3 Tax=Roseburia RepID=D4KQX3_9FIRM
conserved hypothetical protein TIGR00043
L2_022_000M1_scaffold_408_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26710..28371
DNA (1662bp) protein (554aa)
Polysaccharide biosynthesis protein n=4 Tax=Roseburia RepID=C7GE86_9FIRM
Uncharacterized membrane protein, putative virulence factor
Uncharacterized membrane protein putative virulence factor {ECO:0000313|EMBL:CDA55540.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_408_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28484..28870
DNA (387bp) protein (129aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GE87_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55539.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_022_000M1_scaffold_408_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29020..30303
DNA (1284bp) protein (428aa)
Predicted flavoproteins n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXJ2_9FIRM
Predicted flavoproteins
Predicted flavoproteins {ECO:0000313|EMBL:CBL12082.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30290..31921
DNA (1632bp) protein (544aa)
Uncharacterized FAD-dependent dehydrogenases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXJ1_9FIRM
Uncharacterized FAD-dependent dehydrogenases
Uncharacterized FAD-dependent dehydrogenases {ECO:0000313|EMBL:CBL12081.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_022_000M1_scaffold_408_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31971..34649
DNA (2679bp) protein (893aa)
DNA mismatch repair protein MutS n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXJ0_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
DNA mismatch repair protein MutS
L2_022_000M1_scaffold_408_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34668..35366
DNA (699bp) protein (233aa)
Predicted alternative thymidylate synthase (EC:2.1.1.148)
Predicted alternative thymidylate synthase {ECO:0000313|EMBL:CBL12079.1}; EC=2.1.1.148 {ECO:0000313|EMBL:CBL12079.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Predicted alternative thymidylate synthase n=2 Tax=Roseburia intestinalis RepID=D4KQX9_9FIRM
Displaying items 1-30 of 31 in total

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