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L2_022_060G1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_060G1_scaffold_216_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

121..1791
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=2 Tax=Clostridium RepID=B6FN91_9CLOT
L2_022_060G1_scaffold_216_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1803..2642
DNA (840bp) protein (280aa)
Bifunctional protein FolD n=2 Tax=Clostridium RepID=B6FN92_9CLOT
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
methylenetetrahydrofolate dehydrogenase
L2_022_060G1_scaffold_216_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2768..3949
DNA (1182bp) protein (394aa)
NADPH-dependent butanol dehydrogenase {ECO:0000313|EMBL:EEA82540.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EEA82540.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
NADPH-dependent butanol dehydrogenase n=2 Tax=Clostridium RepID=B6FN93_9CLOT
Alcohol dehydrogenase, class IV
L2_022_060G1_scaffold_216_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4104..4994
DNA (891bp) protein (297aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.97.-.- 1.18.1.2)
Ferredoxin--NADP+ reductase, subunit alpha n=2 Tax=Clostridium RepID=B6FN95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22695.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_060G1_scaffold_216_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4994..6382
DNA (1389bp) protein (463aa)
glutamate synthase (NADPH), homotetrameric (EC:1.4.1.13 1.4.1.14)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PW51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22696.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_060G1_scaffold_216_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6489..7238
DNA (750bp) protein (250aa)
Metal cation transporter, ZIP family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN97_9CLOT
Metal cation transporter, ZIP family {ECO:0000313|EMBL:EEA82495.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
zinc/iron permease
L2_022_060G1_scaffold_216_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7251..7730
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribosomal RNA large subunit methyltransferase H n=2 Tax=Clostridium RepID=B6FNA0_9CLOT
conserved hypothetical protein TIGR00246
L2_022_060G1_scaffold_216_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7747..8604
DNA (858bp) protein (286aa)
EDD domain protein, DegV family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA1_9CLOT
EDD domain protein, DegV family {ECO:0000313|EMBL:EEA82469.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
EDD domain protein, DegV family
L2_022_060G1_scaffold_216_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8588..9064
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82470.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative NADH-ubiquinone oxidoreductase
L2_022_060G1_scaffold_216_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9121..9897
DNA (777bp) protein (259aa)
Methyltransferase domain protein n=2 Tax=Clostridium RepID=B6FNA4_9CLOT
Methyltransferase domain protein {ECO:0000313|EMBL:EEA82472.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SAM-dependent methyltransferase
L2_022_060G1_scaffold_216_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9959..10822
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22704.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_216_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10839..11525
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22705.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_216_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11522..12226
DNA (705bp) protein (235aa)
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:EEA82475.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEA82475.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Exonuclease, DNA polymerase III, epsilon subunit family n=2 Tax=Clostridium RepID=B6FNA7_9CLOT
L2_022_060G1_scaffold_216_14
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12343..14673
DNA (2331bp) protein (777aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4Y7_ROSHA
P-type HAD superfamily ATPase
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:AEN98426.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L2_022_060G1_scaffold_216_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14685..17372
DNA (2688bp) protein (896aa)
Putative translation elongation factor G n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA9_9CLOT
Putative translation elongation factor G {ECO:0000313|EMBL:EEA82477.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
small GTP-binding protein domain
L2_022_060G1_scaffold_216_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17347..18684
DNA (1338bp) protein (446aa)
MATE efflux family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNB0_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EEA82478.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_216_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18740..19009
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGJ2_9CLOT
Putative sporulation protein YqfC {ECO:0000313|EMBL:EEA82479.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sporulation protein YqfC
L2_022_060G1_scaffold_216_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19022..20230
DNA (1209bp) protein (403aa)
Putative sporulation protein YqfD n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNB2_9CLOT
Putative sporulation protein YqfD {ECO:0000313|EMBL:EEA82480.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sporulation protein YqfD
L2_022_060G1_scaffold_216_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20283..21269
DNA (987bp) protein (329aa)
PhoH family protein n=2 Tax=Clostridium RepID=B6FNB3_9CLOT
PhoH family protein {ECO:0000313|EMBL:EEA82481.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L2_022_060G1_scaffold_216_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21269..21763
DNA (495bp) protein (165aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Endoribonuclease YbeY n=2 Tax=Clostridium RepID=B6FNB4_9CLOT
conserved hypothetical protein TIGR00043
L2_022_060G1_scaffold_216_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21785..23449
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPH7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22714.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L2_022_060G1_scaffold_216_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23451..24272
DNA (822bp) protein (274aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGJ5_9CLOT
phosphomethylpyrimidine kinase type-1
L2_022_060G1_scaffold_216_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24320..24685
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22716.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_216_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24775..24996
DNA (222bp) protein (74aa)
UPF0291 protein CLONEX_01627 n=2 Tax=Clostridium RepID=B6FNB9_9CLOT
UPF0291 protein CLONEX_01627 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_216_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24974..25522
DNA (549bp) protein (183aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEF7_9CLOT
L2_022_060G1_scaffold_216_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25515..25697
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82489.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_216_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25663..27174
DNA (1512bp) protein (504aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Clostridium RepID=R6PGJ9_9CLOT
tRNA-i(6)A37 thiotransferase enzyme MiaB
L2_022_060G1_scaffold_216_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27247..27663
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82417.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
L2_022_060G1_scaffold_216_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27755..30400
DNA (2646bp) protein (882aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNC6_9CLOT
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA mismatch repair protein MutS
L2_022_060G1_scaffold_216_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30422..32413
DNA (1992bp) protein (664aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNC7_9CLOT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA mismatch repair protein MutL
Displaying items 1-30 of 58 in total

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